Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30838
         (549 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21964| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.4  
SB_48268| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.9  
SB_17377| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.9  
SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.6  

>SB_21964| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 318

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 17/74 (22%), Positives = 36/74 (48%)
 Frame = -2

Query: 227 SLITYQNKRVMCHAVTLNDTSILVHENTNISC*ISHVGLEKNIYIGKSKVFFSKLRYFPC 48
           S+I Y+N+    H +T+ D    +HE+         VG++ + +        + LR  P 
Sbjct: 133 SMIDYRNRHSRSHIITIEDPIEYIHEHKESIVTQREVGIDTDSF---EIALRNTLRQAPD 189

Query: 47  LFLLYQLDTSEVIR 6
           + L+ ++ T E+++
Sbjct: 190 VILMGEIRTQELMK 203


>SB_48268| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4527

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 23/65 (35%), Positives = 27/65 (41%)
 Frame = -1

Query: 348 TVGSSTRLSNKKNLCSNGYELILIIXNSV*NHRLRPVYLTVTNHISKQTCNVSCGYIK*H 169
           TVGS T   N      NG     I   SV +H   P   T TN++    C  S GY    
Sbjct: 741 TVGSYTCACNA-GYTGNGETCADIDECSVGSHTCAPSGSTCTNNVGSYVCTCSTGY-SGD 798

Query: 168 FDTCS 154
            DTC+
Sbjct: 799 GDTCT 803


>SB_17377| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 466

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 18/43 (41%), Positives = 23/43 (53%)
 Frame = +1

Query: 388 YNV*MRHPP*DISSKVSVPPTPPG*AFARPPVLVKLERPSGHQ 516
           YNV  R  P +I  K    P P G  FA  PVLV+ ++P G +
Sbjct: 363 YNVPTRKRPFNIRGKKFPLPMPQGGRFAENPVLVE-DQPRGQR 404


>SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6489

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
 Frame = +3

Query: 378  HGHLQRINAPPTLRYKL*GLSTSHPSWLSLCSPTCPGET-GKAFGPP 515
            HGH+ R N  PT R+ +     +HP+     +P     T  K +G P
Sbjct: 4449 HGHVGRFNNRPTQRHSVPRQIIAHPTEQPTVTPDVKQITLNKTYGDP 4495


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,299,821
Number of Sequences: 59808
Number of extensions: 343429
Number of successful extensions: 810
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 721
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 810
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1264269032
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)