Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30838
         (549 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g29740.1 68414.m03636 leucine-rich repeat family protein / pr...    28   4.7  
At5g26070.1 68418.m03102 hydroxyproline-rich glycoprotein family...    27   8.3  
At1g01930.1 68414.m00111 zinc finger protein-related contains Pf...    27   8.3  

>At1g29740.1 68414.m03636 leucine-rich repeat family protein /
           protein kinase family protein contains Pfam domains
           PF00560: Leucine Rich Repeat and PF00069: Protein kinase
           domain
          Length = 1049

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 20/63 (31%), Positives = 30/63 (47%)
 Frame = -2

Query: 245 DPCI*QSLITYQNKRVMCHAVTLNDTSILVHENTNISC*ISHVGLEKNIYIGKSKVFFSK 66
           DPC+ ++L+  Q+        T+       H N N +C I+H  L+     G+    FSK
Sbjct: 64  DPCLTKTLVITQDVLKEGQNSTIRCDC---HFNNNNTCHITHFVLKTFSLPGRLPPEFSK 120

Query: 65  LRY 57
           LRY
Sbjct: 121 LRY 123


>At5g26070.1 68418.m03102 hydroxyproline-rich glycoprotein family
           protein contains proline-rich extensin domains,
           INTERPRO:IPR002965; similar to root nodule extensin
           [Pisum sativum] gi|15021750|gb|AAK77902; Common family
           members: At5g19800, At5g57070, At1g72790 [Arabidopsis
           thaliana]
          Length = 102

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
 Frame = +1

Query: 427 SKVSVPPTPPG*AFARP---PVLVKLERPSGH 513
           S V++PP PP  A++RP   P  + +  PS H
Sbjct: 49  SPVTLPPPPPHPAYSRPVALPPTLPIPHPSPH 80


>At1g01930.1 68414.m00111 zinc finger protein-related contains Pfam
           PF00023: Ankyrin repeat; contains Pfam PF00096: Zinc
           finger, C2H2 type domain and Prosite PS00028: Zinc
           finger, C2H2 type, domain
          Length = 580

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = +3

Query: 468 CSPTCPGETGKAFGPPVTF 524
           C  + P ET  AFGPP TF
Sbjct: 34  CRLSNPSETQSAFGPPKTF 52


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,246,719
Number of Sequences: 28952
Number of extensions: 255480
Number of successful extensions: 468
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 449
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 468
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1033331880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)