BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= maV30836 (714 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 30 0.38 SPAC3H1.08c |||DUF1640 family protein|Schizosaccharomyces pombe|... 29 0.50 SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor Fep1|Sc... 27 2.7 SPBC1105.07c |||nuclear pore associated protein Thp1-Sac3 comple... 27 3.5 SPCC1739.14 |npp106||nucleoporin Npp106|Schizosaccharomyces pomb... 26 6.1 SPAC16A10.06c |nse2||Smc5-6 complex non-SMC subunit 2 |Schizosac... 26 6.1 >SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|chr 2|||Manual Length = 243 Score = 29.9 bits (64), Expect = 0.38 Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 4/51 (7%) Frame = +1 Query: 25 RGSTRRFSASREPYGHSASKGS----RRTARRWRAGSTTSCTACTRGPRVP 165 R STR+F+ +R P G SAS+ S R ++R + + + ++ +R P P Sbjct: 47 RSSTRQFNNTRSPSGRSASRSSNFSHRSSSRDSFSSNRSYSSSLSRSPEEP 97 >SPAC3H1.08c |||DUF1640 family protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 211 Score = 29.5 bits (63), Expect = 0.50 Identities = 13/31 (41%), Positives = 17/31 (54%) Frame = +1 Query: 4 RPWPSVRRGSTRRFSASREPYGHSASKGSRR 96 RPW + R + R+SAS EP + SRR Sbjct: 15 RPWTIINRIQSERYSASYEPSPELLKQSSRR 45 >SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor Fep1|Schizosaccharomyces pombe|chr 1|||Manual Length = 564 Score = 27.1 bits (57), Expect = 2.7 Identities = 13/35 (37%), Positives = 16/35 (45%), Gaps = 2/35 (5%) Frame = +1 Query: 46 SASREPYGHSASKGSRRTARRWRAGSTTS--CTAC 144 +A P+G S S + T WR G S C AC Sbjct: 2 AAKPAPFGQSCSNCHKTTTSLWRRGPDNSLLCNAC 36 >SPBC1105.07c |||nuclear pore associated protein Thp1-Sac3 complex subunit |Schizosaccharomyces pombe|chr 2|||Manual Length = 442 Score = 26.6 bits (56), Expect = 3.5 Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 2/32 (6%) Frame = +1 Query: 448 RLSLVLWRA--RNVYCFTTFRMLKVPYLFGNY 537 R ++LWR R V+ FT + K P++ G+Y Sbjct: 334 RCEIILWRNLFRKVFLFTFEQSQKTPHVSGSY 365 >SPCC1739.14 |npp106||nucleoporin Npp106|Schizosaccharomyces pombe|chr 3|||Manual Length = 933 Score = 25.8 bits (54), Expect = 6.1 Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 1/40 (2%) Frame = -2 Query: 161 TRGPRVHA-VQDVVEPARHLRAVLLEPFDAECPYGSREAE 45 ++G ++ + + D+ E ++HL VLLEP YG + E Sbjct: 16 SKGSQIESSISDLREKSQHLFGVLLEPQVPVIQYGLNQLE 55 >SPAC16A10.06c |nse2||Smc5-6 complex non-SMC subunit 2 |Schizosaccharomyces pombe|chr 1|||Manual Length = 250 Score = 25.8 bits (54), Expect = 6.1 Identities = 13/34 (38%), Positives = 16/34 (47%) Frame = -2 Query: 587 YHGFVKTKWQLQKKLGG*FPNKYGTFNIRNVVKQ 486 Y F KT W Q G FP+ FN+ N +Q Sbjct: 130 YIEFKKTIWHEQNTDGSDFPSMKTFFNVMNTEEQ 163 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,742,596 Number of Sequences: 5004 Number of extensions: 51690 Number of successful extensions: 150 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 139 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 150 length of database: 2,362,478 effective HSP length: 71 effective length of database: 2,007,194 effective search space used: 333194204 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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