Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30836
         (714 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    30   0.38 
SPAC3H1.08c |||DUF1640 family protein|Schizosaccharomyces pombe|...    29   0.50 
SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor Fep1|Sc...    27   2.7  
SPBC1105.07c |||nuclear pore associated protein Thp1-Sac3 comple...    27   3.5  
SPCC1739.14 |npp106||nucleoporin Npp106|Schizosaccharomyces pomb...    26   6.1  
SPAC16A10.06c |nse2||Smc5-6 complex non-SMC subunit 2 |Schizosac...    26   6.1  

>SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 243

 Score = 29.9 bits (64), Expect = 0.38
 Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 4/51 (7%)
 Frame = +1

Query: 25  RGSTRRFSASREPYGHSASKGS----RRTARRWRAGSTTSCTACTRGPRVP 165
           R STR+F+ +R P G SAS+ S    R ++R   + + +  ++ +R P  P
Sbjct: 47  RSSTRQFNNTRSPSGRSASRSSNFSHRSSSRDSFSSNRSYSSSLSRSPEEP 97


>SPAC3H1.08c |||DUF1640 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 211

 Score = 29.5 bits (63), Expect = 0.50
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +1

Query: 4   RPWPSVRRGSTRRFSASREPYGHSASKGSRR 96
           RPW  + R  + R+SAS EP      + SRR
Sbjct: 15  RPWTIINRIQSERYSASYEPSPELLKQSSRR 45


>SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor
           Fep1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 564

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 13/35 (37%), Positives = 16/35 (45%), Gaps = 2/35 (5%)
 Frame = +1

Query: 46  SASREPYGHSASKGSRRTARRWRAGSTTS--CTAC 144
           +A   P+G S S   + T   WR G   S  C AC
Sbjct: 2   AAKPAPFGQSCSNCHKTTTSLWRRGPDNSLLCNAC 36


>SPBC1105.07c |||nuclear pore associated protein Thp1-Sac3 complex
           subunit |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 442

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
 Frame = +1

Query: 448 RLSLVLWRA--RNVYCFTTFRMLKVPYLFGNY 537
           R  ++LWR   R V+ FT  +  K P++ G+Y
Sbjct: 334 RCEIILWRNLFRKVFLFTFEQSQKTPHVSGSY 365


>SPCC1739.14 |npp106||nucleoporin Npp106|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 933

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = -2

Query: 161 TRGPRVHA-VQDVVEPARHLRAVLLEPFDAECPYGSREAE 45
           ++G ++ + + D+ E ++HL  VLLEP      YG  + E
Sbjct: 16  SKGSQIESSISDLREKSQHLFGVLLEPQVPVIQYGLNQLE 55


>SPAC16A10.06c |nse2||Smc5-6 complex non-SMC subunit 2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 250

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 13/34 (38%), Positives = 16/34 (47%)
 Frame = -2

Query: 587 YHGFVKTKWQLQKKLGG*FPNKYGTFNIRNVVKQ 486
           Y  F KT W  Q   G  FP+    FN+ N  +Q
Sbjct: 130 YIEFKKTIWHEQNTDGSDFPSMKTFFNVMNTEEQ 163


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,742,596
Number of Sequences: 5004
Number of extensions: 51690
Number of successful extensions: 150
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)