Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30836
(714 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_04_0028 + 17302359-17302445,17303887-17303952,17305415-173054... 36 0.042
06_03_0930 - 26038341-26038508,26039114-26039254,26040799-260408... 33 0.23
04_04_1404 + 33302080-33303341,33303435-33305307 33 0.30
07_03_1028 - 23378140-23378802 31 0.91
08_02_0509 - 17988458-17988892,17988986-17989147,17989542-17990378 31 1.2
04_04_1283 - 32373774-32373821,32373834-32373958,32375717-32376227 31 1.2
04_04_0819 - 28312667-28313219,28315157-28316430 29 2.8
01_06_0686 - 31246156-31246555,31246667-31246884,31247007-312471... 29 2.8
03_01_0466 - 3605909-3606073,3606689-3607004,3607184-3607689 28 6.4
10_02_0102 + 5314875-5315231 28 8.5
07_01_1177 + 11125945-11126242,11126465-11128303,11128342-11128358 28 8.5
06_01_0896 - 6889754-6890236 28 8.5
03_03_0236 - 15696495-15696977,15697290-15697339,15699867-15699906 28 8.5
02_02_0357 + 9360108-9360754,9363732-9364137 28 8.5
02_02_0355 + 9312814-9313650 28 8.5
01_06_0060 + 26068792-26069363,26069525-26070209 28 8.5
01_03_0053 + 12050631-12051620 28 8.5
01_01_0124 - 1145105-1145320,1145480-1145611,1146485-1146562,114... 28 8.5
>05_04_0028 +
17302359-17302445,17303887-17303952,17305415-17305489,
17305638-17305737,17305819-17305865,17305937-17305994,
17306161-17306210,17306417-17306473,17306561-17306703,
17306793-17306834,17307083-17307124,17308239-17308272,
17308342-17308443,17310373-17310652,17311202-17311332,
17311676-17311773,17312525-17312717
Length = 534
Score = 35.5 bits (78), Expect = 0.042
Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Frame = +1
Query: 16 SVRRGSTRRFSASREPYGHSASKGSRRTARRWRAGSTTSCTACTRGP-RVPPPA 174
S+ R +R +S SR P SAS+ R R+ S + R P R PPPA
Sbjct: 212 SISRSRSRSYSRSRSPRSRSASRSHSPVKERSRSASQSRSPVKERSPSRSPPPA 265
>06_03_0930 -
26038341-26038508,26039114-26039254,26040799-26040858,
26040972-26041034,26041444-26041454,26041722-26041802,
26042783-26043020,26043563-26043997
Length = 398
Score = 33.1 bits (72), Expect = 0.23
Identities = 18/41 (43%), Positives = 19/41 (46%)
Frame = +1
Query: 10 WPSVRRGSTRRFSASREPYGHSASKGSRRTARRWRAGSTTS 132
WP+V RG R S R P G GS T RW GS S
Sbjct: 54 WPTVARGKRSRSSRRRSPSG----SGSAATKGRWARGSPAS 90
>04_04_1404 + 33302080-33303341,33303435-33305307
Length = 1044
Score = 32.7 bits (71), Expect = 0.30
Identities = 21/62 (33%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
Frame = +1
Query: 7 PWPSVRRGSTRRFSASREPYG---HSASKGSRRTARRWRAGSTTSCTACTRGPRVPPPAW 177
P PS RG ++SR P G S +G R+ R + G T C RG + PP W
Sbjct: 358 PPPSPPRGGGAARASSRRPEGAAPTSQPEGERKKKRLRKTGETEPC----RGNLISPPRW 413
Query: 178 PY 183
+
Sbjct: 414 SF 415
>07_03_1028 - 23378140-23378802
Length = 220
Score = 31.1 bits (67), Expect = 0.91
Identities = 21/60 (35%), Positives = 25/60 (41%), Gaps = 4/60 (6%)
Frame = +1
Query: 13 PSVRRGSTRRFSASREPYGHSASKGSRRTA--RRWRAGSTTSCTACTR--GPRVPPPAWP 180
P+ RR S+ R E + RR R+ AG S GPRVPPPA P
Sbjct: 103 PTTRRASSSRSRTKEESHARGGGAAPRRENKDRKDGAGGRRSQRRAPTISGPRVPPPATP 162
>08_02_0509 - 17988458-17988892,17988986-17989147,17989542-17990378
Length = 477
Score = 30.7 bits (66), Expect = 1.2
Identities = 14/33 (42%), Positives = 16/33 (48%)
Frame = +2
Query: 128 RPAQHVPAAHESRLRHGPISEGDARGGRRGHGP 226
R + P AH RH P + G RGGR GP
Sbjct: 9 RQTRGAPEAHARLPRHAPPAGGHGRGGRGQEGP 41
>04_04_1283 - 32373774-32373821,32373834-32373958,32375717-32376227
Length = 227
Score = 30.7 bits (66), Expect = 1.2
Identities = 24/79 (30%), Positives = 31/79 (39%), Gaps = 8/79 (10%)
Frame = +2
Query: 38 AGFRLLASHTGIRHRKVQEELLADGERV--------QPRPAQHVPAAHESRLRHGPISEG 193
A F L S G + V+ + ADGE QP+P +H H HGP G
Sbjct: 118 AAFNLYTSTLGYQIHDVEAKYYADGEDAYDMRKPLRQPQPKKH---HHHHHHHHGPEGNG 174
Query: 194 DARGGRRGHGPCQGQRALV 250
+A G G G L+
Sbjct: 175 EAEGVGEPVGLASGALTLL 193
>04_04_0819 - 28312667-28313219,28315157-28316430
Length = 608
Score = 29.5 bits (63), Expect = 2.8
Identities = 16/29 (55%), Positives = 16/29 (55%)
Frame = +2
Query: 92 EELLADGERVQPRPAQHVPAAHESRLRHG 178
EE L D R PRP Q PAAH RL G
Sbjct: 478 EEKLED-RRTHPRPPQLPPAAHALRLSRG 505
>01_06_0686 -
31246156-31246555,31246667-31246884,31247007-31247129,
31247304-31247501,31247596-31247994
Length = 445
Score = 29.5 bits (63), Expect = 2.8
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = -2
Query: 614 HLITV*T*FYHGFVKTKWQLQKKLGG*FPNKYGTFNIRN 498
HL+TV T ++G ++ +L G FPN YG IRN
Sbjct: 257 HLLTVGTEGFYGPTSSQEKLNINPGEWFPNNYGADFIRN 295
>03_01_0466 - 3605909-3606073,3606689-3607004,3607184-3607689
Length = 328
Score = 28.3 bits (60), Expect = 6.4
Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 3/59 (5%)
Frame = +1
Query: 13 PSVRRGSTRRFSASR---EPYGHSASKGSRRTARRWRAGSTTSCTACTRGPRVPPPAWP 180
PS S+R +A+R + H +RR ARRW+A + S A P A P
Sbjct: 25 PSTSIASSRWATAARRRSQAVAHQFQASTRRAARRWQAVARGSQAAARWSQAAPVAAVP 83
>10_02_0102 + 5314875-5315231
Length = 118
Score = 27.9 bits (59), Expect = 8.5
Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = +1
Query: 4 RPWPSVRRGSTRRFSASREPYG-HSASKGSRRTARRWRAGSTTSCTA 141
R W RRG+ + R P HSA+ +R RRWR T + T+
Sbjct: 16 REWK--RRGAFSSSLSPRPPRSPHSATTVTRGGRRRWRRSKTATATS 60
>07_01_1177 + 11125945-11126242,11126465-11128303,11128342-11128358
Length = 717
Score = 27.9 bits (59), Expect = 8.5
Identities = 12/53 (22%), Positives = 20/53 (37%)
Frame = +1
Query: 7 PWPSVRRGSTRRFSASREPYGHSASKGSRRTARRWRAGSTTSCTACTRGPRVP 165
P+ + G R + + H +R R W + T+C R P +P
Sbjct: 506 PYTPQQNGVAERMNRTIISKAHCMLSNARMNKRFWAEAANTACYLINRSPSIP 558
>06_01_0896 - 6889754-6890236
Length = 160
Score = 27.9 bits (59), Expect = 8.5
Identities = 19/55 (34%), Positives = 23/55 (41%), Gaps = 2/55 (3%)
Frame = +1
Query: 22 RRGSTRRFSASREPYGHSASKGSRRTARRWRA--GSTTSCTACTRGPRVPPPAWP 180
RRG R + P S +G R RWR G + GPR PPP+ P
Sbjct: 77 RRGRLR----AAPPLPRSGEEGHRCCLWRWRRVEGQLRATDGGCVGPRAPPPSAP 127
>03_03_0236 - 15696495-15696977,15697290-15697339,15699867-15699906
Length = 190
Score = 27.9 bits (59), Expect = 8.5
Identities = 14/48 (29%), Positives = 19/48 (39%)
Frame = +2
Query: 119 VQPRPAQHVPAAHESRLRHGPISEGDARGGRRGHGPCQGQRALVRSED 262
V+P H P +G + + D R GH P G A+V D
Sbjct: 84 VRPTNPGHSPGIGHHVAINGDVDDDDVRPTNPGHSPGIGHHAIVNGAD 131
>02_02_0357 + 9360108-9360754,9363732-9364137
Length = 350
Score = 27.9 bits (59), Expect = 8.5
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = +1
Query: 91 RRTARRWRAGSTTSCTACTRGPR 159
RRT WR S T+ T C RG R
Sbjct: 165 RRTGAGWREYSGTNATGCRRGHR 187
>02_02_0355 + 9312814-9313650
Length = 278
Score = 27.9 bits (59), Expect = 8.5
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = +1
Query: 91 RRTARRWRAGSTTSCTACTRGPR 159
RRT WR S T+ T C RG R
Sbjct: 185 RRTGAGWREYSGTNATGCRRGHR 207
>01_06_0060 + 26068792-26069363,26069525-26070209
Length = 418
Score = 27.9 bits (59), Expect = 8.5
Identities = 12/25 (48%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Frame = +3
Query: 453 FSCAV-ASPQCILFYNVSNVESPVF 524
F CA A P C++ Y+ VE PVF
Sbjct: 235 FLCAAHAGPDCVMVYSGPGVERPVF 259
>01_03_0053 + 12050631-12051620
Length = 329
Score = 27.9 bits (59), Expect = 8.5
Identities = 12/29 (41%), Positives = 14/29 (48%)
Frame = +1
Query: 94 RTARRWRAGSTTSCTACTRGPRVPPPAWP 180
R RWR G+ + C PR PP WP
Sbjct: 152 RDKERWRDGAVLNGAMCGVSPRFMPP-WP 179
>01_01_0124 -
1145105-1145320,1145480-1145611,1146485-1146562,
1147022-1147199,1147269-1147441,1147531-1147632,
1147717-1147794,1148178-1148259,1148343-1148405,
1150196-1150275,1150529-1150723,1150812-1151073,
1151566-1151720,1151799-1151865,1151956-1152179,
1152322-1152451,1153228-1153284,1153396-1153527,
1153758-1154086
Length = 910
Score = 27.9 bits (59), Expect = 8.5
Identities = 14/31 (45%), Positives = 16/31 (51%)
Frame = +2
Query: 116 RVQPRPAQHVPAAHESRLRHGPISEGDARGG 208
R+QPRP V A H RL+ G RGG
Sbjct: 13 RLQPRPPAVVAARHRRRLQSGFPPPNPRRGG 43
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,365,359
Number of Sequences: 37544
Number of extensions: 361465
Number of successful extensions: 1269
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1212
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1268
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1851002996
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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