Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30836
         (714 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_924| Best HMM Match : SNF (HMM E-Value=0.14)                        30   2.1  
SB_23352| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.7  
SB_17027| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.9  
SB_47057| Best HMM Match : Merozoite_SPAM (HMM E-Value=0.94)           28   6.5  
SB_34292| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.5  
SB_24326| Best HMM Match : DENN (HMM E-Value=0)                        28   8.6  
SB_54365| Best HMM Match : PI-PLC-Y (HMM E-Value=0)                    28   8.6  

>SB_924| Best HMM Match : SNF (HMM E-Value=0.14)
          Length = 429

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 15/61 (24%), Positives = 32/61 (52%)
 Frame = +3

Query: 348 SMFTIPMKIVNIICESLLNFTTTTFVVC*MLMIAAFSCAVASPQCILFYNVSNVESPVFI 527
           ++FT+ + ++ II   +L    TTF +  ++++  F+ A+   Q  L+  +S  + P   
Sbjct: 305 TIFTMVLLVLVIIFTMVLLVLVTTFTMVLLVLVTIFTMAIIVAQLALWSGISYNKKPYPD 364

Query: 528 W 530
           W
Sbjct: 365 W 365


>SB_23352| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1830

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +1

Query: 100 ARRWRAGSTTSCTACTRGPRVPPP 171
           +RRW  G   S  AC R P++PPP
Sbjct: 803 SRRWPRGRA-SHRACARAPKMPPP 825


>SB_17027| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 297

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 12/26 (46%), Positives = 13/26 (50%)
 Frame = +1

Query: 7   PWPSVRRGSTRRFSASREPYGHSASK 84
           PWP + RG   RFS  R  Y  S  K
Sbjct: 35  PWPEIHRGFPSRFSKERHGYTLSTVK 60


>SB_47057| Best HMM Match : Merozoite_SPAM (HMM E-Value=0.94)
          Length = 969

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 17/55 (30%), Positives = 25/55 (45%)
 Frame = +1

Query: 22  RRGSTRRFSASREPYGHSASKGSRRTARRWRAGSTTSCTACTRGPRVPPPAWPYL 186
           +R ST   S S E  G   +KG  ++  R R+   TS ++  R   +    W YL
Sbjct: 106 KRYSTPDKSGSSEREGSPVTKGGSKSPNRGRSSRKTSLSSTGRKSDLRARYWSYL 160


>SB_34292| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 868

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 11/35 (31%), Positives = 22/35 (62%)
 Frame = -3

Query: 538 GSFQINTGLSTFETL*NSIHCGLATAQEKAAIINI 434
           GS+ ++  LST + L   + C LA+A+ +A ++ +
Sbjct: 127 GSYAVSLALSTPQRLPLDVECSLASARSQANVVGV 161


>SB_24326| Best HMM Match : DENN (HMM E-Value=0)
          Length = 1281

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 12/39 (30%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = -3

Query: 403 FSKLSQMIFTIFIGIVNIELPSNAY-CRASGQGRCGPTL 290
           +S +S ++  +  G +N   P+    CR++ QG CGP++
Sbjct: 605 YSSVSDLVQQMISGDINGATPAAIQVCRSARQGACGPSV 643


>SB_54365| Best HMM Match : PI-PLC-Y (HMM E-Value=0)
          Length = 593

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = +1

Query: 1   ARPWPSVRRGSTRRFSASREPYGHSASKGSRRTAR 105
           AR  P+ R+  TR +S +R+P  H A+K  R+T +
Sbjct: 80  ARYTPNTRK--TRVYSNTRKPREHDANKNPRKTTK 112


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,067,210
Number of Sequences: 59808
Number of extensions: 418113
Number of successful extensions: 1047
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 929
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1040
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1889780269
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)