Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30835
(626 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1952.10c |||conserved fungal protein |Schizosaccharomyces po... 28 1.3
SPAC6F12.04 |||COPI-coated vesicle associated protein |Schizosac... 27 2.2
SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter family|Sch... 26 3.9
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 26 5.1
SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2 |Schizo... 26 5.1
SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein k... 25 6.8
SPAC1D4.03c |aut12||autophagy associated protein Aut12|Schizosac... 25 6.8
SPAC1071.10c |pma1||P-type proton ATPase Pma1 |Schizosaccharomyc... 25 6.8
SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synth... 25 9.0
SPAC18G6.07c |mra1||ribosome biogenesis protein Mra1|Schizosacch... 25 9.0
>SPAC1952.10c |||conserved fungal protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 361
Score = 27.9 bits (59), Expect = 1.3
Identities = 19/61 (31%), Positives = 27/61 (44%)
Frame = +3
Query: 249 EYDNFWHSQTPIIFLGARLPLHIILLYPAFIYHAAYAVSKLNLPRYAEPFAVGLVTVLID 428
+Y + IFL A + I L +F YH V+ L Y +PF + L VLI
Sbjct: 109 QYFQIFSKDPRAIFLSALYLIDPIRLVTSFNYHERIVVNSHMLLFYLKPFVIAL-PVLIG 167
Query: 429 I 431
+
Sbjct: 168 V 168
>SPAC6F12.04 |||COPI-coated vesicle associated protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 132
Score = 27.1 bits (57), Expect = 2.2
Identities = 8/23 (34%), Positives = 17/23 (73%)
Frame = +1
Query: 205 FMGFTQITSGISYCQSTIISGIR 273
F+GF + +GI+YC + ++G++
Sbjct: 91 FLGFLVLLAGIAYCGANYVAGLQ 113
>SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter
family|Schizosaccharomyces pombe|chr 3|||Manual
Length = 791
Score = 26.2 bits (55), Expect = 3.9
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = +3
Query: 186 FWLGTVLHGIYADNFW 233
FW+ VL G+Y N+W
Sbjct: 357 FWIWIVLPGLYYQNYW 372
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 25.8 bits (54), Expect = 5.1
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -1
Query: 215 NPMKYGTEPKIRPSSAFFKSMK 150
N MKYG E + RP+ +F+S K
Sbjct: 679 NIMKYGDEIRSRPARTWFQSEK 700
>SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1010
Score = 25.8 bits (54), Expect = 5.1
Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Frame = +3
Query: 36 ETWLDWCVRKNDIKQLWAAQPTYIISQAVYVLAGLLTLFHAFK--KGG 173
E WL + R + W++ P++ +S AV V+ L TLF F KGG
Sbjct: 891 ENWLIFITRCSG--PFWSSFPSWQLSGAVLVVDILATLFCIFGWFKGG 936
>SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein
kinase Ppk5 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 836
Score = 25.4 bits (53), Expect = 6.8
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = -2
Query: 265 QKLSYSGNTKCQKLSA*IP 209
QK+ ++G+ CQKLS IP
Sbjct: 472 QKIYFTGSENCQKLSKQIP 490
>SPAC1D4.03c |aut12||autophagy associated protein
Aut12|Schizosaccharomyces pombe|chr 1|||Manual
Length = 513
Score = 25.4 bits (53), Expect = 6.8
Identities = 11/32 (34%), Positives = 22/32 (68%)
Frame = +3
Query: 282 IIFLGARLPLHIILLYPAFIYHAAYAVSKLNL 377
+I + ++ PL+++ + P+ AAY +S+LNL
Sbjct: 166 VIVVLSKNPLYLVGVSPSTTLSAAYLLSELNL 197
>SPAC1071.10c |pma1||P-type proton ATPase Pma1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 919
Score = 25.4 bits (53), Expect = 6.8
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Frame = +3
Query: 36 ETWLDWCVRKNDIKQLWAAQPTYIISQAVYVLAGLLTLFHAFK--KGG 173
E WL + R N W++ P++ +S AV + L T+F F KGG
Sbjct: 803 ENWLIFVTRCNG--PFWSSIPSWQLSGAVLAVDILATMFCIFGWFKGG 848
>SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synthase
Ade3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1323
Score = 25.0 bits (52), Expect = 9.0
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = +3
Query: 348 AAYAVSKLNLPRYAEPF 398
A Y+VS LN+P Y +P+
Sbjct: 338 AGYSVSDLNIPGYKQPW 354
>SPAC18G6.07c |mra1||ribosome biogenesis protein
Mra1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 359
Score = 25.0 bits (52), Expect = 9.0
Identities = 11/20 (55%), Positives = 13/20 (65%), Gaps = 1/20 (5%)
Frame = -3
Query: 450 PPQCRRECLSVQ*PS-PPRK 394
PP CR+ LS P+ PPRK
Sbjct: 279 PPNCRKATLSFDAPTVPPRK 298
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,729,091
Number of Sequences: 5004
Number of extensions: 58772
Number of successful extensions: 137
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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