Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30835
         (626 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0295 + 17006064-17007063,17007068-17007666                       29   4.0  
12_02_0291 + 16951154-16952740                                         28   5.3  
10_08_0941 - 21717703-21718091,21718454-21718564,21718707-217187...    28   5.3  
01_06_1256 - 35775149-35775590,35775782-35775840                       28   5.3  
01_03_0103 - 12567986-12568141,12568307-12568442,12568751-125688...    28   5.3  
12_02_0277 + 16682836-16684368                                         28   7.0  
12_02_0275 + 16662206-16663738                                         28   7.0  
06_01_0027 - 271199-271424,271628-272095,272721-273018,273133-27...    27   9.2  
04_01_0060 - 607615-607706,608497-608531,609283-609360,610402-61...    27   9.2  

>12_02_0295 + 17006064-17007063,17007068-17007666
          Length = 532

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 10/41 (24%), Positives = 23/41 (56%)
 Frame = +3

Query: 27  AEMETWLDWCVRKNDIKQLWAAQPTYIISQAVYVLAGLLTL 149
           A +ETW+ +      +  LW+  P ++  +A Y+++ L+ +
Sbjct: 2   ASVETWVGFGSAMAGVGLLWSRMPEHVHEEARYIISSLVPM 42


>12_02_0291 + 16951154-16952740
          Length = 528

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 10/41 (24%), Positives = 23/41 (56%)
 Frame = +3

Query: 27  AEMETWLDWCVRKNDIKQLWAAQPTYIISQAVYVLAGLLTL 149
           A +ETW+ +      +  LW+  P ++  +A Y+++ L+ +
Sbjct: 2   ASVETWVGFGSALAGVGLLWSRMPEHVHDEARYIISSLVPM 42


>10_08_0941 -
           21717703-21718091,21718454-21718564,21718707-21718791,
           21718885-21719106,21719804-21720292,21722206-21722322
          Length = 470

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 10/19 (52%), Positives = 13/19 (68%), Gaps = 1/19 (5%)
 Frame = +1

Query: 289 SWEPGCPYI*FCC-IPHLY 342
           +W+P CP + FC   PHLY
Sbjct: 388 AWDPNCPRLVFCTESPHLY 406


>01_06_1256 - 35775149-35775590,35775782-35775840
          Length = 166

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -3

Query: 411 PSPPRKAPRNVEDSALRLHT 352
           P PP++  +N ED AL LHT
Sbjct: 8   PFPPKRKRQNGEDGALHLHT 27


>01_03_0103 -
           12567986-12568141,12568307-12568442,12568751-12568824,
           12568932-12569175,12569480-12569766,12570618-12571103,
           12571348-12571459,12571540-12571745,12573071-12573276,
           12573831-12574162,12574284-12574825,12574967-12576308,
           12576386-12576457,12578438-12578505,12579011-12580174
          Length = 1808

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 11/33 (33%), Positives = 15/33 (45%)
 Frame = +3

Query: 408 LVTVLIDIPYDIVAVKFVHWTWHDTDPNIFDRH 506
           ++  L+D       V   HWTW D D   +D H
Sbjct: 215 MILHLLDNHLSFARVGGTHWTWIDVDEQCWDYH 247


>12_02_0277 + 16682836-16684368
          Length = 510

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 9/45 (20%), Positives = 25/45 (55%)
 Frame = +3

Query: 27  AEMETWLDWCVRKNDIKQLWAAQPTYIISQAVYVLAGLLTLFHAF 161
           A +ETW+ +      +  LW+  P ++  +A Y+++ ++ +  ++
Sbjct: 2   ATLETWVGFGSAMAGVGLLWSRMPEHVHEEARYIISSVVPMVMSY 46


>12_02_0275 + 16662206-16663738
          Length = 510

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 9/45 (20%), Positives = 25/45 (55%)
 Frame = +3

Query: 27  AEMETWLDWCVRKNDIKQLWAAQPTYIISQAVYVLAGLLTLFHAF 161
           A +ETW+ +      +  LW+  P ++  +A Y+++ ++ +  ++
Sbjct: 2   ATLETWVGFGSAMAGVGLLWSRMPEHVHEEARYIISSVVPMVMSY 46


>06_01_0027 - 271199-271424,271628-272095,272721-273018,273133-273343,
            273427-274124,274921-274969,276059-276112,276244-276275,
            276319-276484,276563-276628,276717-276812,276868-276957,
            277302-277398,277496-277575,277709-277753,278006-278134,
            278593-278722,278888-279222,279918-280053,280149-280328,
            280422-280679,280752-281137
          Length = 1409

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
 Frame = -1

Query: 257  IVLWQYEMPEVICVNPMKYGTEPKIRPS----SAFFKSMK*C*KASQNVN 120
            + +WQ  +  + CVN  K    P+I  S    SA++K M+ C     +VN
Sbjct: 1145 LAIWQKPINHIECVNSRKIYETPQICKSNDVDSAWYKKMETCISPLPDVN 1194


>04_01_0060 -
           607615-607706,608497-608531,609283-609360,610402-610550,
           610639-610730,611202-611280,611774-612150,613016-613226
          Length = 370

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = -2

Query: 277 VCECQKLSYSGNTKCQKLSA*IP*STVPS 191
           +C C   +YS  T+C++ SA +P S +PS
Sbjct: 183 LCSCGFHNYSSRTQCKQCSAPVP-SGIPS 210


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,067,350
Number of Sequences: 37544
Number of extensions: 388376
Number of successful extensions: 948
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 931
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 947
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1525730988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)