Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30835
         (626 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24439| Best HMM Match : No HMM Matches (HMM E-Value=.)              57   1e-08
SB_58524| Best HMM Match : Ank (HMM E-Value=3.4e-16)                   28   5.4  
SB_33874| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  
SB_40091| Best HMM Match : CNH (HMM E-Value=8.5e-07)                   27   9.4  
SB_52240| Best HMM Match : DUF1700 (HMM E-Value=4.1)                   27   9.4  
SB_37268| Best HMM Match : Cation_ATPase_N (HMM E-Value=1.6)           27   9.4  
SB_11702| Best HMM Match : Cation_ATPase_N (HMM E-Value=1.6)           27   9.4  

>SB_24439| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 539

 Score = 57.2 bits (132), Expect = 1e-08
 Identities = 24/62 (38%), Positives = 39/62 (62%)
 Frame = +3

Query: 144 TLFHAFKKGGRWPYFWLGTVLHGIYADNFWHFVLPEYDNFWHSQTPIIFLGARLPLHIIL 323
           +LF + + G  +   W+   LHG+  +   +FV P+ DNFWH+Q+ ++ +  RLPLHI+L
Sbjct: 102 SLFISLRNGKTYILLWITLSLHGLTTECVSYFV-PDVDNFWHAQSMVMLVEKRLPLHIVL 160

Query: 324 LY 329
            Y
Sbjct: 161 FY 162



 Score = 30.7 bits (66), Expect = 1.0
 Identities = 10/46 (21%), Positives = 26/46 (56%)
 Frame = +3

Query: 30  EMETWLDWCVRKNDIKQLWAAQPTYIISQAVYVLAGLLTLFHAFKK 167
           ++  ++ W V   + +++W  +PT+++ + V++L   +T  H   K
Sbjct: 4   DVSAFVKWFVIFRNPQEIWREEPTFLMCEIVFLLIAAMTFRHETPK 49


>SB_58524| Best HMM Match : Ank (HMM E-Value=3.4e-16)
          Length = 1003

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +2

Query: 335 IYIPRSVCSLKAESSTLRGAFRGGL 409
           ++ P SVCS KA    L GA+ GG+
Sbjct: 687 LFEPMSVCSTKAVEKILAGAWAGGV 711


>SB_33874| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 478

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 12/47 (25%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
 Frame = +3

Query: 156 AFKKGGRW--PYFWLGTVLHGIYADNFWHFVLPEYDNFWHSQTPIIF 290
           ++KKG  +  P F+L T LH ++ +N    ++ + D  + +   ++F
Sbjct: 249 SYKKGAYYSDPIFFLSTALHKVFPENLTKIIMLDSDLRFRNDINLLF 295


>SB_40091| Best HMM Match : CNH (HMM E-Value=8.5e-07)
          Length = 653

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 11/45 (24%), Positives = 26/45 (57%)
 Frame = -1

Query: 239 EMPEVICVNPMKYGTEPKIRPSSAFFKSMK*C*KASQNVNGLRYY 105
           EM + +C++P+  G + ++R ++ +   +  C    QNV  +++Y
Sbjct: 287 EMEQCLCLSPLGSGFDSRLRLNNPYNSQLYLCVALPQNVLLMQWY 331


>SB_52240| Best HMM Match : DUF1700 (HMM E-Value=4.1)
          Length = 254

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 13/21 (61%), Positives = 16/21 (76%)
 Frame = -1

Query: 524 VPGNPVVTIEYVRVSVVPGPV 462
           VPG PV TI  + ++VVPGPV
Sbjct: 145 VPG-PVSTIHILLIAVVPGPV 164


>SB_37268| Best HMM Match : Cation_ATPase_N (HMM E-Value=1.6)
          Length = 239

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 18/58 (31%), Positives = 27/58 (46%)
 Frame = +3

Query: 303 LPLHIILLYPAFIYHAAYAVSKLNLPRYAEPFAVGLVTVLIDIPYDIVAVKFVHWTWH 476
           L  H+ LL P    + A+  + L +   +E F  GL+ V I     I++  F HW  H
Sbjct: 22  LVFHLYLL-PFIPLYGAWLYTWLMIYGVSEYFEAGLIAVAIIGLLQILSGLFCHWNVH 78


>SB_11702| Best HMM Match : Cation_ATPase_N (HMM E-Value=1.6)
          Length = 239

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 18/58 (31%), Positives = 27/58 (46%)
 Frame = +3

Query: 303 LPLHIILLYPAFIYHAAYAVSKLNLPRYAEPFAVGLVTVLIDIPYDIVAVKFVHWTWH 476
           L  H+ LL P    + A+  + L +   +E F  GL+ V I     I++  F HW  H
Sbjct: 22  LVFHLYLL-PFIPLYGAWLYTWLMIYGVSEYFEAGLIAVAIIGLLQILSGLFCHWNVH 78


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,681,602
Number of Sequences: 59808
Number of extensions: 445178
Number of successful extensions: 1304
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1303
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1560464625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)