Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30832
(619 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC227.02c |||rRNA processing protein Rrp15 |Schizosaccharomyce... 30 0.31
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 28 1.2
SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyc... 27 1.6
SPBC1706.01 |tea4|wsh3|tip elongation aberrant protein Tea4|Schi... 27 2.2
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch... 27 2.9
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar... 27 2.9
SPAC4F10.08 |mug126||sequence orphan|Schizosaccharomyces pombe|c... 26 5.0
SPCC1682.16 |rpt4||19S proteasome regulatory subunit Rpt4|Schizo... 25 6.6
SPAPB17E12.08 |||N-glycosylation protein |Schizosaccharomyces po... 25 8.8
SPBC725.06c |ppk31|mug25|serine/threonine protein kinase Ppk31 |... 25 8.8
>SPAC227.02c |||rRNA processing protein Rrp15 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 205
Score = 29.9 bits (64), Expect = 0.31
Identities = 19/72 (26%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
Frame = +3
Query: 45 ANAKSEKPASSEDKDTPIRQIMTIIEHKIR--NLEKRKSKLTSYRDLQKAGKELNSDQKV 218
A+ +++ ++++DTP+ + + +R N EK+ SKL + R ++ KE+
Sbjct: 72 ADILNQQVTQTDEQDTPVLSLSKKSKKALRKSNAEKKDSKLRTSRRRERLRKEMVGRVTS 131
Query: 219 AVAKYDEVAQTL 254
VA E A+ L
Sbjct: 132 VVAVNAETAKAL 143
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 27.9 bits (59), Expect = 1.2
Identities = 24/111 (21%), Positives = 48/111 (43%), Gaps = 1/111 (0%)
Frame = -1
Query: 544 PSSFNSCLGVTSGYKSSKIFKSSSVNLAAPFVPFMKSVLASALPICIRQSR-ISKTSFIL 368
P + +S + S + +S N+ + +SA+P + S I+ +S
Sbjct: 690 PVASSSSSPIPSSSSLVSTYSASLSNITHSSLSLTAMSSSSAIPTSVNSSTLITASSSNT 749
Query: 367 LVSAA*RTQASFLACFFASRSEEIAIAVTCFERSLANSRVWATSSYLATAT 215
L+S+ + A + ++ S + A + L NS ATS YL++++
Sbjct: 750 LLSSITSSSAIVSSTTVSNISSNLPSATASSQSQLTNSSTLATSLYLSSSS 800
>SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 735
Score = 27.5 bits (58), Expect = 1.6
Identities = 23/80 (28%), Positives = 43/80 (53%)
Frame = +3
Query: 42 AANAKSEKPASSEDKDTPIRQIMTIIEHKIRNLEKRKSKLTSYRDLQKAGKELNSDQKVA 221
A N+K+ + + SE+ + I ++ ++ + RN R+ KL DL+K+ K+ K+
Sbjct: 533 AINSKNVQQSRSEELEQQISKLTDNLQ-EYRNTV-RELKL----DLEKSKKKNEDLSKLE 586
Query: 222 VAKYDEVAQTLEFARDLSKQ 281
V K +E+A + L+KQ
Sbjct: 587 VEKVEEIANLKKELTHLAKQ 606
>SPBC1706.01 |tea4|wsh3|tip elongation aberrant protein
Tea4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 809
Score = 27.1 bits (57), Expect = 2.2
Identities = 18/85 (21%), Positives = 41/85 (48%)
Frame = +3
Query: 51 AKSEKPASSEDKDTPIRQIMTIIEHKIRNLEKRKSKLTSYRDLQKAGKELNSDQKVAVAK 230
A K ASS D+P+R+ +++ + + + +SY N+D+ + +
Sbjct: 379 ANKHKTASSATVDSPLRRSLSV------DAMQSNASFSSYSSTS------NTDKSLRPSS 426
Query: 231 YDEVAQTLEFARDLSKQVTAIAISS 305
Y V+++ F D+S+ I++++
Sbjct: 427 YSAVSESSNFTHDVSRDNKEISLNA 451
>SPBC21D10.06c |map4||cell agglutination protein
Map4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 948
Score = 26.6 bits (56), Expect = 2.9
Identities = 18/44 (40%), Positives = 23/44 (52%)
Frame = -1
Query: 541 SSFNSCLGVTSGYKSSKIFKSSSVNLAAPFVPFMKSVLASALPI 410
SSF TS Y+ S+ FK SSV L + + AS+LPI
Sbjct: 440 SSFLIISTFTSSYEHSEPFKVSSVPLTSNNFSSISHSSASSLPI 483
>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1131
Score = 26.6 bits (56), Expect = 2.9
Identities = 34/120 (28%), Positives = 54/120 (45%), Gaps = 2/120 (1%)
Frame = -1
Query: 541 SSFNSCLGVTSGYKSSKIFKSSSVNLAAPFVPFMKSVLAS--ALPICIRQSRISKTSFIL 368
SSF G TS Y +K SSS LA+ VL+S A P + S ++
Sbjct: 844 SSFFDASGFTSIYNGTKAGFSSSFALASNSESGASDVLSSTIAKPTFKFSTSNSGSTSYS 903
Query: 367 LVSAA*RTQASFLACFFASRSEEIAIAVTCFERSLANSRVWATSSYLATATF*SEFSSFP 188
+ S++ R + + S S I + + + SL +S V SSY+A++ + S+ P
Sbjct: 904 IPSSSSRNEGT------TSYSSNITVTSSTLKPSLTSS-VSTASSYIASSASSNTLSTEP 956
>SPAC4F10.08 |mug126||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 436
Score = 25.8 bits (54), Expect = 5.0
Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 2/63 (3%)
Frame = +3
Query: 66 PASSEDKDTPI--RQIMTIIEHKIRNLEKRKSKLTSYRDLQKAGKELNSDQKVAVAKYDE 239
P ED P Q I +K+K+ +LQ AGK+L + Q+ A Y +
Sbjct: 134 PTDQEDPRNPQLDSQYEAFITQGESQTDKKKTSTVQEEELQNAGKKLETVQENPQA-YSK 192
Query: 240 VAQ 248
V Q
Sbjct: 193 VTQ 195
>SPCC1682.16 |rpt4||19S proteasome regulatory subunit
Rpt4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 388
Score = 25.4 bits (53), Expect = 6.6
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = +3
Query: 138 LEKRKSKLTSYRDLQKAGKELNSDQKVAVAKYDEVAQTLE 257
LEK KS L +R+ K+L + V KYD+ ++
Sbjct: 8 LEKYKSYLLQHREWDSKLKDLRFGNRDLVKKYDKTEDDIK 47
>SPAPB17E12.08 |||N-glycosylation protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 166
Score = 25.0 bits (52), Expect = 8.8
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -1
Query: 292 IAVTCFERSLANSRVWATSSYLATATF*SEFSS 194
IA++CF+ + + W TS + T F S SS
Sbjct: 87 IAISCFQTAAYIVQDWITSPIIRTLPFRSSSSS 119
>SPBC725.06c |ppk31|mug25|serine/threonine protein kinase Ppk31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1032
Score = 25.0 bits (52), Expect = 8.8
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +1
Query: 319 KNKLKRKPGFVMQQRPTK*KKFYLF 393
KN+ + K F +Q+RP K +++LF
Sbjct: 1008 KNQQRNKEKFRIQKRPNKKYRYHLF 1032
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,316,339
Number of Sequences: 5004
Number of extensions: 41162
Number of successful extensions: 147
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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