Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30832
         (619 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58404| Best HMM Match : No HMM Matches (HMM E-Value=.)             114   6e-26
SB_11738| Best HMM Match : SH3_2 (HMM E-Value=3.7e-32)                 32   0.32 
SB_22971| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.99 
SB_8591| Best HMM Match : DUF601 (HMM E-Value=0.23)                    31   0.99 
SB_17203| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.3  
SB_7678| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.7  
SB_8350| Best HMM Match : ShTK (HMM E-Value=2.5e-09)                   30   1.7  
SB_933| Best HMM Match : ExoD (HMM E-Value=6)                          29   2.3  
SB_51986| Best HMM Match : HLH (HMM E-Value=0.15)                      29   4.0  
SB_46602| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.0  
SB_41836| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.5e-07)        28   5.3  
SB_27572| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.1e-19)        28   5.3  
SB_51224| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.0  
SB_49186| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.2  
SB_46249| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.2  
SB_15453| Best HMM Match : Prenyltrans (HMM E-Value=0)                 27   9.2  
SB_25269| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.2  

>SB_58404| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 532

 Score =  114 bits (274), Expect = 6e-26
 Identities = 71/195 (36%), Positives = 102/195 (52%), Gaps = 4/195 (2%)
 Frame = +3

Query: 33  MPSAANAKSEKPASSEDKDTPIRQIMTIIEHKIRNLEKRKSKLTSYRDLQKAGKELNSDQ 212
           MPSA++  S+  A  +  D   +  + ++E K+RNLEKRK KL  Y+    +G+ELN+DQ
Sbjct: 1   MPSASSKPSDSQALMDSSDIA-KSGLLLVEKKVRNLEKRKLKLDGYKKQMDSGQELNADQ 59

Query: 213 KVAVAKYDEVAQTLEFARDLSKQVTAIAISSXXXXXXXXXXXXWVRYAAETN----KIKE 380
           K A+A  D V   L+ A+DL KQ   +                  +  A+ N    K+ E
Sbjct: 60  KAAIANLDVVEMNLDMAKDLLKQFQQMHSEYQRQQKKQARRDQVAQQQAQHNADVLKVNE 119

Query: 381 VLLILDCLMQMGSADARTDFINGTNGAAKLTEDDLKILDDLYPEVTPKHELNEEGQSGFH 560
           V L L  LM   S D RTDF+NGTNGA  +TED    +D+ Y  +TP    +EE      
Sbjct: 120 V-LELQHLMDSLSEDVRTDFLNGTNGAVVVTEDQFVQIDEFYKLITP----DEESDVPVA 174

Query: 561 LQITRAAEHLYSIID 605
            Q+  A+EH+  ++D
Sbjct: 175 KQLRTASEHIVKLLD 189


>SB_11738| Best HMM Match : SH3_2 (HMM E-Value=3.7e-32)
          Length = 2436

 Score = 32.3 bits (70), Expect = 0.32
 Identities = 20/50 (40%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
 Frame = +3

Query: 84  KDTPIRQIMTIIEHKIRNLEKRKSKLTSY-RDLQKAGKELNSDQKVAVAK 230
           KD+  ++  ++ E KIR L+KR S+L S  R L+   K+L  D+K A+ K
Sbjct: 322 KDSGNQKATSLGEEKIRKLKKRNSELVSIARQLEDKAKKL-QDEKNAILK 370


>SB_22971| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 116

 Score = 30.7 bits (66), Expect = 0.99
 Identities = 14/46 (30%), Positives = 27/46 (58%)
 Frame = +3

Query: 120 EHKIRNLEKRKSKLTSYRDLQKAGKELNSDQKVAVAKYDEVAQTLE 257
           + KIRNL+K+  ++   +  QKAGK+L  +Q   +   D + + ++
Sbjct: 65  DKKIRNLKKKLRQIEELKTQQKAGKQLEVNQLEKLKNEDALLKEIK 110


>SB_8591| Best HMM Match : DUF601 (HMM E-Value=0.23)
          Length = 3368

 Score = 30.7 bits (66), Expect = 0.99
 Identities = 13/55 (23%), Positives = 30/55 (54%)
 Frame = +3

Query: 57   SEKPASSEDKDTPIRQIMTIIEHKIRNLEKRKSKLTSYRDLQKAGKELNSDQKVA 221
            +E+P +        +   T++++   + +  ++  T +RD+Q+ GKE NSD  ++
Sbjct: 1928 TEQPVAPSASLQTTKAEKTLVKNTAESTKYTETSSTQHRDIQQRGKEQNSDDALS 1982


>SB_17203| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2672

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 22/79 (27%), Positives = 36/79 (45%)
 Frame = +3

Query: 39   SAANAKSEKPASSEDKDTPIRQIMTIIEHKIRNLEKRKSKLTSYRDLQKAGKELNSDQKV 218
            S   AK +     E  +  I ++   +E     LE+ + +L+    LQ   KEL S++K 
Sbjct: 1680 SLDQAKKKNHEEEERLEAEIAELANTVETLRTELEQSQVRLSK---LQTQVKELKSEKKE 1736

Query: 219  AVAKYDEVAQTLEFARDLS 275
               K DE+    +  R+LS
Sbjct: 1737 LQRKVDELTSEAQRRRNLS 1755


>SB_7678| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1432

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
 Frame = +3

Query: 9    KKSCCL*RMPSAANAKSEKPASSEDKDTPIRQIMTIIEHKIRNLEKRKSKLTSYRDLQKA 188
            KK   L ++PS  N    K    + KD+ IR ++T     I   E+++      +D Q  
Sbjct: 1136 KKDRTLRKLPSKENMSDGKDNLEDGKDSSIRGVLTDYNISIPAQERKRKLGRPRKDEQNL 1195

Query: 189  G-KELNSDQKVA 221
            G K+ N + + A
Sbjct: 1196 GSKKKNGESQTA 1207


>SB_8350| Best HMM Match : ShTK (HMM E-Value=2.5e-09)
          Length = 1103

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
 Frame = +3

Query: 57   SEKPASSEDKDTPIRQIMTIIEHKIRNLEK-RKSKLTSYRDLQKAGKELNSDQKVAVAKY 233
            SE  A  ++KD  + +   + + KI+  +  +KSK     +L KAGK + +   V   K 
Sbjct: 861  SESEAEDDEKD--VEEKHEVKQDKIKKKKHDKKSKAKDKDNLAKAGKAIQAILDVTTRKK 918

Query: 234  DEVAQTLE 257
             + AQ+L+
Sbjct: 919  ADAAQSLQ 926


>SB_933| Best HMM Match : ExoD (HMM E-Value=6)
          Length = 555

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 20/50 (40%), Positives = 28/50 (56%)
 Frame = -1

Query: 505 YKSSKIFKSSSVNLAAPFVPFMKSVLASALPICIRQSRISKTSFILLVSA 356
           Y SS     S++N++ PF+P+   V+    P  +RQ  I K  FI LVSA
Sbjct: 82  YPSSMDGVDSTLNMS-PFIPY---VIRPKGPRLLRQGTIMKAGFIGLVSA 127


>SB_51986| Best HMM Match : HLH (HMM E-Value=0.15)
          Length = 2110

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
 Frame = +3

Query: 78  EDKDTPIRQIMTIIEHKIRNLEKRKSKLTSYRDLQKAGKELNSDQKVAVAK--YDEVAQT 251
           E +D PI +I ++++    N+EK   K   ++D ++ GK     +K    K   D+  QT
Sbjct: 208 EIEDEPINEISSLVDFVDENIEKSLLKDPLWQDEEEKGKRKKKKKKRKRDKSLQDQTCQT 267

Query: 252 L 254
           +
Sbjct: 268 M 268


>SB_46602| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1805

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 32/149 (21%), Positives = 64/149 (42%), Gaps = 8/149 (5%)
 Frame = +3

Query: 120  EHKIRNLEKRKSKL-TSYRDLQKAGKELNSDQKVAVAKYD---EVAQTLEFARD--LSKQ 281
            E ++R L ++  KL T Y DL+K   +++ ++ +   + +   EVAQ  E  R    +K+
Sbjct: 889  EDELRTLREKLEKLETEYTDLEKKHSQISEEKAIVAEQLESEREVAQETEEMRQRLQTKK 948

Query: 282  VTAIAISSXXXXXXXXXXXXWVRYAAETNK-IKEVLLILDCLMQMGSADARTDFIN-GTN 455
                 + S             +    +  K +KE+  + D L +  SA  +         
Sbjct: 949  NELEELLSDLEGRITEEEENVLALTEDKKKLLKEIQDLEDSLEEEESARQKLHLEKVSCE 1008

Query: 456  GAAKLTEDDLKILDDLYPEVTPKHELNEE 542
               K  E+DL +++D   +++ + +  EE
Sbjct: 1009 AKIKKLEEDLSLVEDTNSKISKEKKTLEE 1037


>SB_41836| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.5e-07)
          Length = 1128

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = +3

Query: 78  EDKDTPIRQIMTIIEHKIRNLEKRKSKLTSYRD 176
           ED++  IRQ+  IIE K  ++E++  +L   RD
Sbjct: 847 EDREDEIRQLRQIIEDKESDIEEQVMELIHLRD 879


>SB_27572| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.1e-19)
          Length = 3107

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
 Frame = +3

Query: 162 TSYRDLQKAGKELNSDQKVAVAKYDEVAQTLEFA-RDLSKQ 281
           +SY  +QK  +EL  D   A AK++E+   L+ A R+L K+
Sbjct: 497 SSYLAVQKEKEELQDDLLTAQAKFNELQAELDKAHRELQKE 537


>SB_51224| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 808

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 18/69 (26%), Positives = 31/69 (44%), Gaps = 2/69 (2%)
 Frame = +3

Query: 57  SEKPASSEDKDTPIRQIMTIIEHKIRNLEKR--KSKLTSYRDLQKAGKELNSDQKVAVAK 230
           SE   S +D+   + +    +E ++  L      SKL +  DL  A  +L  ++ V   +
Sbjct: 587 SENSQSMQDRILKLEEERNSLEVEVSRLRSELVSSKLKADEDLMNAKTKLKQEELVRSRQ 646

Query: 231 YDEVAQTLE 257
           YDE    L+
Sbjct: 647 YDERIHLLQ 655


>SB_49186| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1776

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 37/125 (29%), Positives = 51/125 (40%), Gaps = 1/125 (0%)
 Frame = -1

Query: 553  PDCPSSFNSCLGVTSGYKSSKIFKSSSVNLAAPFVPFMKSVLASALPICIRQSRISKT-S 377
            P   SSF+     +     S   KS + +L + F  F KS   S LP        S T S
Sbjct: 1286 PSLFSSFHKARTTSLLSVFSSFHKSRTTSLPSLFSSFHKSRTPS-LPSLFSSFHKSHTPS 1344

Query: 376  FILLVSAA*RTQASFLACFFASRSEEIAIAVTCFERSLANSRVWATSSYLATATF*SEFS 197
               L S+  +++   L   F+S  +    A T    SL +S      S+L +  F   FS
Sbjct: 1345 LPSLFSSFHKSRTPSLLSLFSSLHK----ARTTSLPSLFSSLPHPPPSFLPSRVFSPPFS 1400

Query: 196  SFPAF 182
            SFP F
Sbjct: 1401 SFPTF 1405


>SB_46249| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 834

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 28/104 (26%), Positives = 46/104 (44%)
 Frame = -1

Query: 505 YKSSKIFKSSSVNLAAPFVPFMKSVLASALPICIRQSRISKTSFILLVSAA*RTQASFLA 326
           YKSS ++KSSS+  ++P      S L  + P+  + S + K+S +   SA  ++   +  
Sbjct: 692 YKSSPLYKSSSLYKSSPL--HKSSPLYKSSPL-YKSSSLYKSSSLYKSSALYKSSPLYKC 748

Query: 325 CFFASRSEEIAIAVTCFERSLANSRVWATSSYLATATF*SEFSS 194
                 S     +      SL  S     SSYL  ++F  + SS
Sbjct: 749 SSLCKSSSLYKSSPLHKSSSLYKSSYLYKSSYLYKSSFLYKSSS 792


>SB_15453| Best HMM Match : Prenyltrans (HMM E-Value=0)
          Length = 2376

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +2

Query: 560  PSNNKSCRTPLLHN*WKT*R 619
            PS+NK C T L H+ W+T R
Sbjct: 2280 PSDNKLCHTYLKHSDWRTYR 2299


>SB_25269| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 871

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +3

Query: 504 YPEVTPKHELNEEGQSGFHLQITRAAEHLYSII 602
           Y +VT + ELN+  + GF LQ+ +    ++S I
Sbjct: 480 YNKVTKRCELNKTNKDGFPLQVDQVKPSIFSDI 512


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,743,224
Number of Sequences: 59808
Number of extensions: 287670
Number of successful extensions: 728
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 672
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 719
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1524174750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)