Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30832
(619 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g55990.1 68416.m06221 expressed protein contains Pfam profile... 31 0.46
At5g17910.1 68418.m02100 expressed protein 31 0.61
At1g11400.2 68414.m01310 expressed protein 30 1.1
At1g11400.1 68414.m01309 expressed protein 30 1.1
At3g06670.1 68416.m00786 expressed protein 29 1.9
At1g73370.1 68414.m08492 sucrose synthase, putative / sucrose-UD... 29 3.3
At5g27330.1 68418.m03263 expressed protein 28 4.3
At5g16780.1 68418.m01965 SART-1 family protein contains Pfam dom... 28 5.7
At3g20150.1 68416.m02554 kinesin motor family protein contains P... 28 5.7
At1g71760.1 68414.m08294 hypothetical protein 28 5.7
At1g71150.1 68414.m08210 expressed protein ; expression support... 28 5.7
At5g35810.1 68418.m04303 hypothetical protein 27 7.5
At4g05170.1 68417.m00777 basic helix-loop-helix (bHLH) family pr... 27 7.5
At3g30370.1 68416.m03834 hypothetical protein 27 7.5
At5g62410.1 68418.m07832 SMC2-like condensin, putative (SMC2) (T... 27 10.0
At5g42880.1 68418.m05226 hypothetical protein contains Pfam prof... 27 10.0
At5g28350.2 68418.m03443 expressed protein 27 10.0
At5g28350.1 68418.m03442 expressed protein 27 10.0
At3g61480.1 68416.m06885 expressed protein 27 10.0
>At3g55990.1 68416.m06221 expressed protein contains Pfam profile
PF03005: Arabidopsis proteins of unknown function
Length = 487
Score = 31.5 bits (68), Expect = 0.46
Identities = 18/70 (25%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Frame = +3
Query: 57 SEKPASSEDKDTPIRQIMTI-IEHKIRNLEKRKSKLTSYRDLQKAGKELNSDQKVAVAKY 233
+ KP D+ TPI +I T+ ++ I+N + + + + +Q + K++ + V+K
Sbjct: 56 TSKPHDVHDEATPITEITTLPVQESIKNSDPIQESIKNADSVQDSVKDVAEPVQEEVSKT 115
Query: 234 DEVAQTLEFA 263
+EV + FA
Sbjct: 116 EEVKKIELFA 125
>At5g17910.1 68418.m02100 expressed protein
Length = 1342
Score = 31.1 bits (67), Expect = 0.61
Identities = 16/53 (30%), Positives = 28/53 (52%)
Frame = +3
Query: 99 RQIMTIIEHKIRNLEKRKSKLTSYRDLQKAGKELNSDQKVAVAKYDEVAQTLE 257
RQ+ + E K+ ++ +S T D +K E N+D++ +AK D V+ E
Sbjct: 524 RQLSEVSESKVSSIPDTESVCTVLEDDEKKVDENNADRETKIAKVDMVSDNDE 576
>At1g11400.2 68414.m01310 expressed protein
Length = 204
Score = 30.3 bits (65), Expect = 1.1
Identities = 17/51 (33%), Positives = 29/51 (56%)
Frame = +3
Query: 117 IEHKIRNLEKRKSKLTSYRDLQKAGKELNSDQKVAVAKYDEVAQTLEFARD 269
+E +IR L K+K +LT + + A ++LN +Q +K +E Q L+ D
Sbjct: 152 VEKRIRAL-KKKIRLTEAQQQKTASRDLNPEQLEKFSKLEEWRQELKALED 201
>At1g11400.1 68414.m01309 expressed protein
Length = 204
Score = 30.3 bits (65), Expect = 1.1
Identities = 17/51 (33%), Positives = 29/51 (56%)
Frame = +3
Query: 117 IEHKIRNLEKRKSKLTSYRDLQKAGKELNSDQKVAVAKYDEVAQTLEFARD 269
+E +IR L K+K +LT + + A ++LN +Q +K +E Q L+ D
Sbjct: 152 VEKRIRAL-KKKIRLTEAQQQKTASRDLNPEQLEKFSKLEEWRQELKALED 201
>At3g06670.1 68416.m00786 expressed protein
Length = 865
Score = 29.5 bits (63), Expect = 1.9
Identities = 20/76 (26%), Positives = 30/76 (39%)
Frame = +3
Query: 39 SAANAKSEKPASSEDKDTPIRQIMTIIEHKIRNLEKRKSKLTSYRDLQKAGKELNSDQKV 218
SA+N + EKPAS+ K+ P + + + R L Y D + +K
Sbjct: 672 SASNTQKEKPASNIQKEQPKPHLSNGVAASPTSSSPRSGGLVDYEDDEDDEDYKPPPRKQ 731
Query: 219 AVAKYDEVAQTLEFAR 266
A DE + L R
Sbjct: 732 PEASEDEEGELLRLKR 747
>At1g73370.1 68414.m08492 sucrose synthase, putative / sucrose-UDP
glucosyltransferase, putative similar to sucrose
synthase GI:6682841 from [Citrus unshiu]
Length = 942
Score = 28.7 bits (61), Expect = 3.3
Identities = 16/44 (36%), Positives = 25/44 (56%)
Frame = +3
Query: 156 KLTSYRDLQKAGKELNSDQKVAVAKYDEVAQTLEFARDLSKQVT 287
KL L +++N DQK A +Y E+ L+F + L+K+VT
Sbjct: 766 KLLKMGSLYGFWRQVNEDQKKAKKRYIEMLYNLQF-KQLTKKVT 808
>At5g27330.1 68418.m03263 expressed protein
Length = 628
Score = 28.3 bits (60), Expect = 4.3
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
Frame = +3
Query: 81 DKDTPIRQIMTIIEHKIRNLEKRK---SKLTSYRDLQKAGKELNSDQ 212
D++T IR + IR LE + S++ RDL K+G +L S++
Sbjct: 141 DRETEIRDLKREANGLIRKLESEREEFSRVCDERDLVKSGFDLQSEE 187
>At5g16780.1 68418.m01965 SART-1 family protein contains Pfam
domain, PF03343: SART-1 family
Length = 820
Score = 27.9 bits (59), Expect = 5.7
Identities = 17/48 (35%), Positives = 24/48 (50%)
Frame = +3
Query: 132 RNLEKRKSKLTSYRDLQKAGKELNSDQKVAVAKYDEVAQTLEFARDLS 275
RN++K+KSKL D GKE + K + +T EF R L+
Sbjct: 649 RNMDKKKSKLVGIVD-DDGGKESKDKESKDRFKDIRIERTDEFGRTLT 695
>At3g20150.1 68416.m02554 kinesin motor family protein contains Pfam
domain, PF00225: Kinesin motor domain
Length = 1114
Score = 27.9 bits (59), Expect = 5.7
Identities = 25/88 (28%), Positives = 44/88 (50%), Gaps = 3/88 (3%)
Frame = +3
Query: 45 ANAKSEKPASSEDKDTPIRQIM---TIIEHKIRNLEKRKSKLTSYRDLQKAGKELNSDQK 215
A K EK +S E +D R ++ +EH L+++ + L S KA E ++ K
Sbjct: 923 AQLKQEKLSSEELEDALRRAVLGHARFVEH-YTELQEKYNDLCSKH---KATVEWITELK 978
Query: 216 VAVAKYDEVAQTLEFARDLSKQVTAIAI 299
AVAK + FA+ L+ +++A+ +
Sbjct: 979 KAVAKAGKKGCGSRFAKSLASELSALRV 1006
>At1g71760.1 68414.m08294 hypothetical protein
Length = 259
Score = 27.9 bits (59), Expect = 5.7
Identities = 11/35 (31%), Positives = 21/35 (60%)
Frame = +3
Query: 438 FINGTNGAAKLTEDDLKILDDLYPEVTPKHELNEE 542
F+ N + K+ +++ + D +PEV + E+NEE
Sbjct: 56 FVQSFNMSRKVADEEAHAVGDSFPEVYVEGEVNEE 90
>At1g71150.1 68414.m08210 expressed protein ; expression supported
by MPSS
Length = 351
Score = 27.9 bits (59), Expect = 5.7
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = +3
Query: 45 ANAKSEKPASSEDKDTPIRQIMTIIEHKIRNLEKR 149
++ KS K +SSE R++ ++IEH + L+ R
Sbjct: 303 SDVKSSKNSSSEALSGSCRRLQSLIEHMVTELDTR 337
>At5g35810.1 68418.m04303 hypothetical protein
Length = 347
Score = 27.5 bits (58), Expect = 7.5
Identities = 18/52 (34%), Positives = 25/52 (48%)
Frame = -1
Query: 472 VNLAAPFVPFMKSVLASALPICIRQSRISKTSFILLVSAA*RTQASFLACFF 317
+ L A FV + VLA + + + + K S ILLV A T SF+ F
Sbjct: 270 LGLLALFVSIISMVLAFTATLILIRDQEPKWSLILLVYVASATALSFVVLHF 321
>At4g05170.1 68417.m00777 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 296
Score = 27.5 bits (58), Expect = 7.5
Identities = 14/36 (38%), Positives = 25/36 (69%), Gaps = 2/36 (5%)
Frame = +3
Query: 111 TIIEHKIRNLEKRKSKLT-SYRDL-QKAGKELNSDQ 212
++++H+IRN + K ++T Y++L KA E NSD+
Sbjct: 115 SLLDHEIRNHKSSKEQITQDYKNLTSKAQLEENSDE 150
>At3g30370.1 68416.m03834 hypothetical protein
Length = 179
Score = 27.5 bits (58), Expect = 7.5
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +3
Query: 477 DDLKILDDLYPEVTPKHELNEEGQSGFHLQITRAAEHLY 593
D+ +I D+YPE E N+E ++ F + R HLY
Sbjct: 35 DEPQIHHDVYPE--SDREENDEDEARFQTHLQRGDGHLY 71
>At5g62410.1 68418.m07832 SMC2-like condensin, putative (SMC2)
(TITAN3) very strong similarity to SMC2-like condensin
(TITAN3) [Arabidopsis thaliana] GI:14279543; contains
Pfam profiles PF02483: SMC family C-terminal domain,
PF02463: RecF/RecN/SMC N terminal domain
Length = 1175
Score = 27.1 bits (57), Expect = 10.0
Identities = 12/26 (46%), Positives = 19/26 (73%)
Frame = +3
Query: 90 TPIRQIMTIIEHKIRNLEKRKSKLTS 167
T ++Q+ T IEH + L++RKS+L S
Sbjct: 412 TELKQLKTKIEHCEKELKERKSQLMS 437
>At5g42880.1 68418.m05226 hypothetical protein contains Pfam profile
PF05701: Plant protein of unknown function (DUF827)
Length = 751
Score = 27.1 bits (57), Expect = 10.0
Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Frame = +3
Query: 123 HKIRNLEKRKSKLTSYRDLQKAGKELNSDQKVA-VAKYDEVAQTLEFARDLSKQV 284
HKI+ +E+RK +Q+A E + ++A AKYD + + LE + L +++
Sbjct: 159 HKIQTIERRKMVDEELEKIQEAMPEYKREAELAEEAKYDAL-EELENTKGLIEEL 212
>At5g28350.2 68418.m03443 expressed protein
Length = 1087
Score = 27.1 bits (57), Expect = 10.0
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = -1
Query: 511 SGYKSSKIFKSSSVNLAAPFVPFMKSVLASALPICIRQSRISK 383
S +K S + KSSS +P V +KS+L S + +SK
Sbjct: 913 SSHKKSSLDKSSSFKEQSPHVASVKSILESHASYLMSGKELSK 955
>At5g28350.1 68418.m03442 expressed protein
Length = 1127
Score = 27.1 bits (57), Expect = 10.0
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = -1
Query: 511 SGYKSSKIFKSSSVNLAAPFVPFMKSVLASALPICIRQSRISK 383
S +K S + KSSS +P V +KS+L S + +SK
Sbjct: 953 SSHKKSSLDKSSSFKEQSPHVASVKSILESHASYLMSGKELSK 995
>At3g61480.1 68416.m06885 expressed protein
Length = 1091
Score = 27.1 bits (57), Expect = 10.0
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = -1
Query: 511 SGYKSSKIFKSSSVNLAAPFVPFMKSVLASALPICIRQSRISK 383
S +K S + KSSS +P V +KS+L S + +SK
Sbjct: 918 SSHKKSSLDKSSSFKEQSPHVASVKSILESHASYLMSGKELSK 960
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,905,610
Number of Sequences: 28952
Number of extensions: 207243
Number of successful extensions: 592
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 577
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 591
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1246162608
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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