Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30829
         (713 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1223.08c |dfr1||dihydrofolate reductase Dfr1|Schizosaccharom...    64   2e-11
SPAC22A12.06c |||serine hydrolase|Schizosaccharomyces pombe|chr ...    46   4e-06
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    28   1.2  
SPBC19C2.05 |ran1|pat1|serine/threonine protein kinase Ran1|Schi...    27   3.5  
SPBC947.08c |||histone promoter control protein Hpc2 |Schizosacc...    26   4.7  
SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces pombe...    26   4.7  
SPBC776.07 |||mitochondrial Mam33 family protein|Schizosaccharom...    26   6.1  
SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|ch...    26   6.1  

>SPCC1223.08c |dfr1||dihydrofolate reductase
           Dfr1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 461

 Score = 64.1 bits (149), Expect = 2e-11
 Identities = 39/117 (33%), Positives = 60/117 (51%), Gaps = 8/117 (6%)
 Frame = +3

Query: 309 LKILAFHGYRQNGTVFRAKIGSFRKAVAKYAQLTFISAP---HKVLNDGSGSEDSRSWWF 479
           LK+L  HG+ Q+G VF  K+GS +K ++KYA+L F + P    +  +     E  R    
Sbjct: 5   LKVLCLHGWIQSGPVFSKKMGSVQKYLSKYAELHFPTGPVVADEEADPNDEEEKKRLAAL 64

Query: 480 NSEDN-----TFSGKCLGGPAVGFEETLRLIELVVEEHGPFHGFMGFSQGACLGGLI 635
             E N      F  +        ++E+L  I   ++E GPF G +GFSQGA +G ++
Sbjct: 65  GGEQNGGKFGWFEVEDFKNTYGSWDESLECINQYMQEKGPFDGLIGFSQGAGIGAML 121


>SPAC22A12.06c |||serine hydrolase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 429

 Score = 46.4 bits (105), Expect = 4e-06
 Identities = 38/129 (29%), Positives = 58/129 (44%), Gaps = 14/129 (10%)
 Frame = +3

Query: 306 KLKILAFHGYRQNGTVFRAKIGSFRKAVAKYAQLTFISAP---HKVLNDGSGSE-DSRSW 473
           K KIL  HGY ++G +F  K+ + R+ +A      F + P    K  ++ +GS  D+ S 
Sbjct: 6   KSKILCIHGYAESGELFSVKLRALRERMADSVDFYFPTGPIELDKAKDELNGSGFDALST 65

Query: 474 WFNSED----------NTFSGKCLGGPAVGFEETLRLIELVVEEHGPFHGFMGFSQGACL 623
            F+S            N ++      P   FE     +   ++EHGPF G +GFSQG  L
Sbjct: 66  VFSSSPASHRRGWWRINEYADTKQLEPTKAFE----YLASYIKEHGPFDGILGFSQGTNL 121

Query: 624 GGLIGGHAT 650
              +    T
Sbjct: 122 AANLAALVT 130


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 13/42 (30%), Positives = 19/42 (45%)
 Frame = -2

Query: 640 PPISPPKHAPCEKPINPWKGPCSSTTNSINLKVSSKPTAGPP 515
           PPI PP +     P N    P +  + +  +  +SKP   PP
Sbjct: 254 PPIPPPSNGTVSSPPNSPPRPIAPVSMNPAINSTSKPPLPPP 295


>SPBC19C2.05 |ran1|pat1|serine/threonine protein kinase
           Ran1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 470

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
 Frame = -2

Query: 595 NPWKGPCSSTTNSINLKVSSKPT--AGPPKHLPLNVLSSELNHHERESSLPLPSFKTL 428
           NPWK  CS T  +    V +  T  +  P    LN L + +     ++ + LP   TL
Sbjct: 237 NPWKRACSQTDGTYRSYVHNPSTLLSILPISRELNSLLNRIFDRNPKTRITLPELSTL 294


>SPBC947.08c |||histone promoter control protein Hpc2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 338

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -2

Query: 640 PPISPPKHAPCEKPINPWKGPCSSTTN 560
           PP+S PKH+P    +N    P S+ TN
Sbjct: 256 PPLSEPKHSPA--TVNEHISPPSALTN 280


>SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 727

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 20/77 (25%), Positives = 31/77 (40%), Gaps = 2/77 (2%)
 Frame = -2

Query: 679 NRRHTLNILFVAWPPISPPKHAPCEKPINPWKGPCSSTTNS--INLKVSSKPTAGPPKHL 506
           N +H++N+  +   P  PP        I     P S+ TNS   +   +      PP HL
Sbjct: 554 NTQHSINLHTIVPSPYEPPLSVTPSTAITNLSIPESNRTNSSASSKSFTMNDLILPPLHL 613

Query: 505 PLNVLSSELNHHERESS 455
             N   +   H + +SS
Sbjct: 614 K-NTTQTNNAHEDAQSS 629


>SPBC776.07 |||mitochondrial Mam33 family
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 269

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
 Frame = -2

Query: 538 SKPTAGPPKHLPLNVLSSELNHHERE--SSLPLP 443
           S  TAG P+   +N LSSE+++ + +  S + LP
Sbjct: 50  SSHTAGNPRSKLINALSSEIDYEKNQVLSEISLP 83


>SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 815

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -2

Query: 508 LPLNVLSSELNHHERESSLPLPSF 437
           + +N LSS LN+H +  S+  PSF
Sbjct: 702 IDINTLSSMLNYHTQAVSIHHPSF 725


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,905,276
Number of Sequences: 5004
Number of extensions: 61147
Number of successful extensions: 160
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)