Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30829
(713 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0055 + 22403608-22403865,22403977-22404075,22404172-224042... 53 3e-07
12_02_0785 + 23135764-23135973,23136061-23136713,23136822-231369... 48 1e-05
07_03_1738 - 29141829-29141989,29142112-29142343,29142751-291427... 41 0.001
03_02_0645 + 10133658-10134140,10134280-10134627,10134787-10135131 35 0.056
09_06_0107 + 20907560-20908491,20908511-20908625,20908967-209090... 31 0.91
06_01_0963 + 7411944-7412396,7412677-7412736,7412828-7413010,741... 30 1.6
01_01_0379 - 2956396-2957409 30 2.1
12_02_0674 - 21745321-21746223,21746229-21747608 29 3.7
02_03_0231 - 16636377-16636403,16636590-16636645,16636793-166368... 29 3.7
04_04_1107 - 30954647-30954769,30955052-30955141,30955309-309556... 28 6.4
03_01_0528 + 3966687-3967643 28 6.4
02_01_0129 - 934865-935152,935241-935490,935965-936105,937175-93... 28 6.4
01_03_0117 + 12684729-12685886,12685978-12686145,12686292-126863... 28 6.4
06_03_0382 - 20142830-20144329 28 8.5
03_02_0341 - 7643426-7643973,7644340-7644505 28 8.5
>04_04_0055 +
22403608-22403865,22403977-22404075,22404172-22404213,
22404350-22404479,22405118-22405219,22405960-22406066
Length = 245
Score = 52.8 bits (121), Expect = 3e-07
Identities = 36/114 (31%), Positives = 53/114 (46%), Gaps = 4/114 (3%)
Frame = +3
Query: 312 KILAFHGYRQNGTVFRAKI-GSFRKAVAKYAQLTFISAPHKV--LNDGSGSEDSRSW-WF 479
+ L HG+R +G + R ++ G + V L F AP +D G D + WF
Sbjct: 23 RFLCLHGFRTSGEIMRKQVVGKWPADVTARLDLVFADAPFPAEGKSDVEGIFDPPYYEWF 82
Query: 480 NSEDNTFSGKCLGGPAVGFEETLRLIELVVEEHGPFHGFMGFSQGACLGGLIGG 641
+ N + F+E L IE ++ + GPF G MGFSQG+ L G + G
Sbjct: 83 QFDKNFTEYR-------NFDECLNYIEELMIKEGPFDGLMGFSQGSILSGALPG 129
>12_02_0785 +
23135764-23135973,23136061-23136713,23136822-23136903,
23137031-23137113,23137229-23137361,23137493-23137664,
23137929-23138656
Length = 686
Score = 47.6 bits (108), Expect = 1e-05
Identities = 43/152 (28%), Positives = 62/152 (40%), Gaps = 27/152 (17%)
Frame = +3
Query: 306 KLKILAFHGYRQNGTVFRAKIGSFRKAVAKYAQLTFISAP------HKVLNDG------- 446
KLKIL HG+RQN + F+ + + K + A L FI AP +K D
Sbjct: 451 KLKILCLHGFRQNASNFKGRTSALAKKLKHIADLVFIDAPHELSFVYKPNPDHCSGRSSL 510
Query: 447 -SGSEDSRSWWFNSEDNTFSG----KCLGGP---------AVGFEETLRLIELVVEEHGP 584
SG+ + W + ++ F K P GFEE+ +E + + G
Sbjct: 511 PSGTPKRKYAWLVAPNSIFYAEHDWKIADAPFDPLQYQQQTDGFEESYAYLEHAISQMGN 570
Query: 585 FHGFMGFSQGACLGGLIGGHATKRIFKVCLRF 680
G +GFSQGA + L K + RF
Sbjct: 571 IDGILGFSQGAAMAALFCRQQQKTCGSLKFRF 602
>07_03_1738 -
29141829-29141989,29142112-29142343,29142751-29142792,
29143312-29143410,29143575-29143667,29143742-29143876,
29144251-29144290,29144475-29144844,29146575-29146650
Length = 415
Score = 40.7 bits (91), Expect = 0.001
Identities = 31/120 (25%), Positives = 55/120 (45%), Gaps = 7/120 (5%)
Frame = +3
Query: 306 KLKILAFHGYRQNGTVFRAKIGSFRKAVAKYAQLTFISAPHKVLNDGSGSEDSRSW---- 473
K K+L HG+R +G+ + +I + ++ + + F P + G SE +
Sbjct: 174 KFKVLCLHGFRTSGSFLKKQISKWNPSIFQQFDMVF---PDGIFPAGGKSEIEGIFPPPY 230
Query: 474 --WFN-SEDNTFSGKCLGGPAVGFEETLRLIELVVEEHGPFHGFMGFSQGACLGGLIGGH 644
WF ++D T +E + + + ++GPF G +GFSQGA L L+ G+
Sbjct: 231 FEWFQFNKDFT--------EYTNLDECISYLCDYMVKNGPFDGLLGFSQGATLSALLIGY 282
>03_02_0645 + 10133658-10134140,10134280-10134627,10134787-10135131
Length = 391
Score = 35.1 bits (77), Expect = 0.056
Identities = 25/98 (25%), Positives = 40/98 (40%)
Frame = -2
Query: 631 SPPKHAPCEKPINPWKGPCSSTTNSINLKVSSKPTAGPPKHLPLNVLSSELNHHERESSL 452
S P +P +P++ S++ S+++ SS A PP PL + L H RE +
Sbjct: 9 SSPVFSPSRRPLSCKAASASASPESVSVAASSPAQAAPPAGSPLRPFA--LRAHLREEAT 66
Query: 451 PLPSFKTL*GAEIKVSCAYLATAFRNDPILALNTVPFC 338
P P A + + R P++ VP C
Sbjct: 67 PSPQPSAAAAAAVSAPAGSVLKRRRPAPLV----VPVC 100
>09_06_0107 +
20907560-20908491,20908511-20908625,20908967-20909058,
20909293-20909556,20910714-20911494
Length = 727
Score = 31.1 bits (67), Expect = 0.91
Identities = 16/46 (34%), Positives = 21/46 (45%)
Frame = -2
Query: 640 PPISPPKHAPCEKPINPWKGPCSSTTNSINLKVSSKPTAGPPKHLP 503
PP PP P P++P S TTNS ++ S PP +P
Sbjct: 82 PPPPPPPPPPPPPPLSPTPTTTSWTTNSSSISASPILPPPPPPPMP 127
>06_01_0963 +
7411944-7412396,7412677-7412736,7412828-7413010,
7413259-7413339,7414219-7414541,7414961-7415084
Length = 407
Score = 30.3 bits (65), Expect = 1.6
Identities = 10/25 (40%), Positives = 12/25 (48%)
Frame = +2
Query: 569 GGAWTFPWIYGFLTGSMFGWAYWRP 643
G W PW+ F TG G+ W P
Sbjct: 235 GAGWETPWVTDFTTGMGVGFLNWHP 259
>01_01_0379 - 2956396-2957409
Length = 337
Score = 29.9 bits (64), Expect = 2.1
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = -2
Query: 628 PPKHAPCEKPINPWKGPCSSTTNSINLKVSSKPTAGPPKHLPLNV 494
PP+ P + P WK T+ + L+V PTAG + LP+ V
Sbjct: 41 PPEDFP-DVPGVQWKDLVYDATHGLKLRVYRPPTAGDAERLPVLV 84
>12_02_0674 - 21745321-21746223,21746229-21747608
Length = 760
Score = 29.1 bits (62), Expect = 3.7
Identities = 16/59 (27%), Positives = 27/59 (45%)
Frame = -2
Query: 610 CEKPINPWKGPCSSTTNSINLKVSSKPTAGPPKHLPLNVLSSELNHHERESSLPLPSFK 434
C P++ G SST ++ L S+ T+ P PL+ + ++ R L P+ K
Sbjct: 577 CTSPLSTATGKTSSTPSTSPLSTSTSKTSSTPSTSPLSSSTIKIPTTARTGELSTPTDK 635
>02_03_0231 -
16636377-16636403,16636590-16636645,16636793-16636853,
16637590-16637649,16638007-16638096,16638775-16638906,
16639016-16639293,16639916-16639949,16640036-16640105,
16641170-16641282,16641654-16641836,16642106-16642283,
16642958-16643142,16643347-16643477,16643620-16643772,
16643849-16643995,16644662-16644737
Length = 657
Score = 29.1 bits (62), Expect = 3.7
Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 2/78 (2%)
Frame = +3
Query: 423 PHKVLN-DGSGSEDSRSWWFNSEDNTFSGKCLGGP-AVGFEETLRLIELVVEEHGPFHGF 596
PH+ L+ +GSG D+++ S FSG GG G RLI ++ + G H
Sbjct: 45 PHRKLDREGSGRHDNKTQLLRSSSGGFSGAENGGKLGHGSPSRDRLIYVLTQLIGQ-HVD 103
Query: 597 MGFSQGACLGGLIGGHAT 650
+ G+ + G++ HAT
Sbjct: 104 VHVKNGSIISGIL--HAT 119
>04_04_1107 -
30954647-30954769,30955052-30955141,30955309-30955617,
30955732-30955842,30955945-30956379,30956452-30956610,
30957044-30957994,30959016-30959483
Length = 881
Score = 28.3 bits (60), Expect = 6.4
Identities = 20/85 (23%), Positives = 37/85 (43%), Gaps = 1/85 (1%)
Frame = +3
Query: 333 YRQNGTVFRAKIGSFRKAV-AKYAQLTFISAPHKVLNDGSGSEDSRSWWFNSEDNTFSGK 509
Y GT+ +AKI K++ K Q F + + + + ++SW + +
Sbjct: 742 YGLTGTIDKAKIAEIAKSIPGKRGQQKFSQEEVQQMINHALQGLNQSW--EEKFKSLEQS 799
Query: 510 CLGGPAVGFEETLRLIELVVEEHGP 584
G P +G + + I+LV +H P
Sbjct: 800 VRGAPLLGVDHETQEIDLVTLQHAP 824
>03_01_0528 + 3966687-3967643
Length = 318
Score = 28.3 bits (60), Expect = 6.4
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -2
Query: 640 PPISPPKHAPCEKPINPWKGPCSSTTNSI 554
PP +P + P P+ P PCS+ TNS+
Sbjct: 152 PPRTPTRANPPPPPL-PTSSPCSTVTNSV 179
>02_01_0129 -
934865-935152,935241-935490,935965-936105,937175-937707
Length = 403
Score = 28.3 bits (60), Expect = 6.4
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -2
Query: 667 TLNILFVAWPPISPPKHAPCEKPINPWKGPCSST 566
TL +LF + PP PP H P +P+ P +T
Sbjct: 17 TLFLLFPSPPPPRPPPHQPQPQPLPCGAAPSDAT 50
>01_03_0117 +
12684729-12685886,12685978-12686145,12686292-12686336,
12686438-12687280
Length = 737
Score = 28.3 bits (60), Expect = 6.4
Identities = 13/42 (30%), Positives = 17/42 (40%)
Frame = -2
Query: 640 PPISPPKHAPCEKPINPWKGPCSSTTNSINLKVSSKPTAGPP 515
P + PP HAP E P P P + +S + PP
Sbjct: 271 PTMPPPAHAPAETPAPPTTPPALPPATTAPSPKNSSSSPPPP 312
>06_03_0382 - 20142830-20144329
Length = 499
Score = 27.9 bits (59), Expect = 8.5
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Frame = -2
Query: 574 SSTTNSINLKVSSKPTAGPPKHLPLNVLS---SELNHHERESSLPLP 443
+ T S + S P AG P+ + +V + SEL+ E +SLPLP
Sbjct: 300 TDTIESSSSSESPTPVAGTPRGMHTSVSAPALSELDRMEDSASLPLP 346
>03_02_0341 - 7643426-7643973,7644340-7644505
Length = 237
Score = 27.9 bits (59), Expect = 8.5
Identities = 14/42 (33%), Positives = 18/42 (42%)
Frame = -2
Query: 640 PPISPPKHAPCEKPINPWKGPCSSTTNSINLKVSSKPTAGPP 515
PP++ P H P + K P STT + P GPP
Sbjct: 191 PPVTVPDHKPAPVTVPDHKPP--STTTPVYAPPKPTPIYGPP 230
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,755,050
Number of Sequences: 37544
Number of extensions: 408916
Number of successful extensions: 1298
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1220
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1293
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1851002996
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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