Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30828
(674 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 226 3e-60
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 226 3e-60
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma... 100 4e-22
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce... 89 5e-19
SPBC1198.03c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 34 0.016
SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit Apc1|Sc... 33 0.050
SPCC4B3.07 |||nuclear pore associated protein|Schizosaccharomyce... 29 0.61
SPBC3B9.21 |dcp1||mRNA decapping complex subunit Dcp1|Schizosacc... 27 1.9
SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces pomb... 27 2.5
SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces p... 27 3.3
SPBC839.07 |ibp1||itty bitty phosphatase Ibp1|Schizosaccharomyce... 26 5.7
SPBPB8B6.03 ||SPAPB8B6.03, SPAPB8B6.03|acetamidase |Schizosaccha... 26 5.7
SPAC1071.02 |||TFIIH regulator |Schizosaccharomyces pombe|chr 1|... 25 7.6
SPCC1393.06c |||rRNA processing protein Ipi1|Schizosaccharomyces... 25 7.6
SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated memb... 25 7.6
SPAC1A6.01c ||SPAC23C4.20c|human thyroid receptor interacting pr... 25 10.0
SPBC1604.01 |mug158|SPBC1677.01c|sulfatase modifying factor 1 re... 25 10.0
SPBC13E7.02 |cwf24||GCN5-related N acetyltransferase|Schizosacch... 25 10.0
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 226 bits (552), Expect = 3e-60
Identities = 104/187 (55%), Positives = 140/187 (74%), Gaps = 4/187 (2%)
Frame = +3
Query: 48 YQTFQRIVENVNVIIATYNDDGGPMGEVRVDPSKGSVGFGSGLHGWAFTLKQFSEMYADK 227
YQ F R+VE+VNV+I+TY D +G+ +V P KG+V F SGLHGWAFT++QF+ YA K
Sbjct: 175 YQNFARVVESVNVVISTYYDK--VLGDCQVFPDKGTVAFASGLHGWAFTVRQFANRYAKK 232
Query: 228 FKIDLVKLMNRLWGENFFNPQTKKWSKQKDD----DNKRSFCMYVLDPIYKVFDAIMKFK 395
F ID K+M RLWGEN+FNP+TKKWSK D N+R+F M++LDPIY++FDA+M +
Sbjct: 233 FGIDRNKMMQRLWGENYFNPKTKKWSKSATDANGNSNQRAFNMFILDPIYRIFDAVMNSR 292
Query: 396 KEEIDDLLKKIGVTIKHEDSDKDGKALLKVVMRSWLPAGEALLQMIAIHLPSPVVAQKYR 575
K+E+ LL K+ VTIK ++ + +GKALLKVVMR +LPA +AL++MI +HLPSP AQ+YR
Sbjct: 293 KDEVFTLLSKLEVTIKPDEKELEGKALLKVVMRKFLPAADALMEMIVLHLPSPKTAQQYR 352
Query: 576 MGDVIRG 596
+ G
Sbjct: 353 AETLYEG 359
Score = 53.6 bits (123), Expect = 2e-08
Identities = 22/31 (70%), Positives = 26/31 (83%)
Frame = +1
Query: 580 EMLYEGPHDDEAAIGIKSCDPEAPLMMYVSK 672
E LYEGP DDE A+GI++CD APLM+YVSK
Sbjct: 354 ETLYEGPMDDECAVGIRNCDANAPLMIYVSK 384
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 226 bits (552), Expect = 3e-60
Identities = 104/187 (55%), Positives = 140/187 (74%), Gaps = 4/187 (2%)
Frame = +3
Query: 48 YQTFQRIVENVNVIIATYNDDGGPMGEVRVDPSKGSVGFGSGLHGWAFTLKQFSEMYADK 227
YQ F R+VE+VNV+I+TY D +G+ +V P KG+V F SGLHGWAFT++QF+ YA K
Sbjct: 175 YQNFARVVESVNVVISTYYDK--VLGDCQVFPDKGTVAFASGLHGWAFTVRQFANRYAKK 232
Query: 228 FKIDLVKLMNRLWGENFFNPQTKKWSKQKDD----DNKRSFCMYVLDPIYKVFDAIMKFK 395
F ID K+M RLWGEN+FNP+TKKWSK D N+R+F M++LDPIY++FDA+M +
Sbjct: 233 FGIDRNKMMQRLWGENYFNPKTKKWSKSATDANGNSNQRAFNMFILDPIYRIFDAVMNSR 292
Query: 396 KEEIDDLLKKIGVTIKHEDSDKDGKALLKVVMRSWLPAGEALLQMIAIHLPSPVVAQKYR 575
K+E+ LL K+ VTIK ++ + +GKALLKVVMR +LPA +AL++MI +HLPSP AQ+YR
Sbjct: 293 KDEVFTLLSKLEVTIKPDEKELEGKALLKVVMRKFLPAADALMEMIVLHLPSPKTAQQYR 352
Query: 576 MGDVIRG 596
+ G
Sbjct: 353 AETLYEG 359
Score = 53.6 bits (123), Expect = 2e-08
Identities = 22/31 (70%), Positives = 26/31 (83%)
Frame = +1
Query: 580 EMLYEGPHDDEAAIGIKSCDPEAPLMMYVSK 672
E LYEGP DDE A+GI++CD APLM+YVSK
Sbjct: 354 ETLYEGPMDDECAVGIRNCDANAPLMIYVSK 384
>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1000
Score = 99.5 bits (237), Expect = 4e-22
Identities = 64/215 (29%), Positives = 100/215 (46%), Gaps = 15/215 (6%)
Frame = +3
Query: 3 MDRXXXXXXXXXXXXYQTFQRIVENVNVIIATY----------NDDGGPMGEVRVDPSKG 152
MDR + R+VE VN +I T+ ND+ + P +G
Sbjct: 156 MDRLITELKLSPIEAHYHLLRLVEQVNAVIGTFYTGELMQLADNDEVISDEGIYFAPEQG 215
Query: 153 SVGFGSGLHGWAFTLKQFSEMYADKFKIDLVKLMNRLWGENFFNPQTKKWSKQKDDDNKR 332
+V F S GWAF L QFSE Y K + L LWG+ + +P+TK+ + K +R
Sbjct: 216 NVVFASAYDGWAFCLDQFSEFYEKKLGLKQKALTKCLWGDYYLDPKTKRVLQPKHLQGRR 275
Query: 333 ---SFCMYVLDPIYKVFD-AIMKFKKEEIDDLLKKIGVTIKHED-SDKDGKALLKVVMRS 497
F +VL+ ++ V++ A+ E I+ ++K + + + D KD + LL + +
Sbjct: 276 LKPMFVQFVLENLWAVYESAVSNRNLENIEKIIKALNIKVLPRDIKSKDPRNLLLAIFQQ 335
Query: 498 WLPAGEALLQMIAIHLPSPVVAQKYRMGDVIRGTP 602
WLP A+L +PSP+ AQ R V+ TP
Sbjct: 336 WLPLSTAILLTAIREIPSPINAQANRARKVLSSTP 370
>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 983
Score = 89.0 bits (211), Expect = 5e-19
Identities = 51/171 (29%), Positives = 90/171 (52%), Gaps = 2/171 (1%)
Frame = +3
Query: 48 YQTFQRIVENVNVIIATYNDDGGPMGEVRVDPSKGSVGFGSGLHGWAFTLKQFSEMYADK 227
Y + +++ VN I + D + RV P G+V F S G+ FTL F+++Y D+
Sbjct: 286 YHKLRHVIDEVNDNICQISKDL----KYRVSPELGNVCFASCDLGYCFTLSSFAKLYIDR 341
Query: 228 FK-IDLVKLMNRLWGENFFNPQTKKWSKQK-DDDNKRSFCMYVLDPIYKVFDAIMKFKKE 401
ID+ RLWG+ +F+ +T+K++KQ D RSF ++L+P+YK+ + + E
Sbjct: 342 HGGIDVDLFSKRLWGDIYFDSKTRKFAKQSLDGSGVRSFVHFILEPLYKLHTLTISDEAE 401
Query: 402 EIDDLLKKIGVTIKHEDSDKDGKALLKVVMRSWLPAGEALLQMIAIHLPSP 554
++ L + +K +D D K LL+++ S+ + + H+PSP
Sbjct: 402 KLKKHLSSFQIYLKPKDYLLDPKPLLQLICASFFGFPVGFVNAVTRHIPSP 452
>SPBC1198.03c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 249
Score = 34.3 bits (75), Expect = 0.016
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +3
Query: 186 AFTLKQFSEMYADKFKIDLVKLMNRLWGENFFNPQ 290
A+ + + E Y DK K ++K +W FFNP+
Sbjct: 153 AYVISYYVEKYVDKAKFPIIKGFIEMWNRKFFNPR 187
>SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit
Apc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1458
Score = 32.7 bits (71), Expect = 0.050
Identities = 15/45 (33%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Frame = +3
Query: 189 FTLKQFS-EMYADKFKIDLVKLMNRLWGENFFNPQTKKWSKQKDD 320
FT+ + + E Y+ ++ + ++L+NRL ++F +P+T KW K D
Sbjct: 620 FTVLEIAAEEYSPNWESEELRLVNRLDVDSFLHPKTPKWVFNKQD 664
>SPCC4B3.07 |||nuclear pore associated protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 393
Score = 29.1 bits (62), Expect = 0.61
Identities = 18/81 (22%), Positives = 39/81 (48%), Gaps = 4/81 (4%)
Frame = +3
Query: 195 LKQFSEMYADKFKIDLVKLMNRLWGENFFNPQTKKWSK----QKDDDNKRSFCMYVLDPI 362
L QF + +++ F +D+ ++ LW ++ +P T + K + +N +F Y +D
Sbjct: 242 LFQFGDQFSEAFLLDVCSIITALWLKSVVDPNTPAYYKLIAQEAVLNNYTTFAEYYMD-- 299
Query: 363 YKVFDAIMKFKKEEIDDLLKK 425
++ + +DDL+ K
Sbjct: 300 ------LLDNSESNVDDLINK 314
>SPBC3B9.21 |dcp1||mRNA decapping complex subunit
Dcp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 127
Score = 27.5 bits (58), Expect = 1.9
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = -1
Query: 434 DSNLLKEIINLLFLKFH-DGIEHLVDRIQNV 345
D N+L+ +NL LKFH IE ++D +V
Sbjct: 3 DENILRNAVNLQVLKFHYPEIESIIDIASHV 33
>SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 775
Score = 27.1 bits (57), Expect = 2.5
Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 4/75 (5%)
Frame = +3
Query: 270 ENFFNPQTKKWSKQKDDDNKRSFCMYVLDPIYKVFDAIMKFKKEEIDDLLKKIGVTIK-- 443
+++ + K +K+K NK++ +LDPI ++ EI L K +G+ K
Sbjct: 72 DDYLDAHRKSSTKKKSSQNKQAKESKLLDPIAFQHKIALEEDDREIAHLEKMLGIKSKDK 131
Query: 444 --HEDSDKDGKALLK 482
H DK+ LL+
Sbjct: 132 SAHSKIDKEFGWLLE 146
>SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1272
Score = 26.6 bits (56), Expect = 3.3
Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 3/82 (3%)
Frame = -2
Query: 466 PSLSESSCLIVTPIFLRRSSISSFLNFMMASNTL*IGSKTYMQNERLLSSSFCFDHFFV* 287
P +S S C+ +F+ S S +F+M S L + S+ Y + + S+C + +
Sbjct: 417 PFISSSLCISPRYMFVVNSETVSVGSFLMVSEQLQMLSERYGFFDSIKFGSYCVSNLSIF 476
Query: 286 G---LKKFSPHNLFISLTRSIL 230
L+K S NL ++L +L
Sbjct: 477 PKLLLEKTSVINLIMALYVKLL 498
>SPBC839.07 |ibp1||itty bitty phosphatase Ibp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 138
Score = 25.8 bits (54), Expect = 5.7
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Frame = -1
Query: 200 FEGESPPMKTRPETNRALARVDTH---LTHGTTIIVICGYNDV 81
+EGE P R ++ LA VD H L ++IV C Y+ V
Sbjct: 33 YEGERIPGSVRIPSDTFLASVDQHVDDLMKKRSLIVHCTYSQV 75
>SPBPB8B6.03 ||SPAPB8B6.03, SPAPB8B6.03|acetamidase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 547
Score = 25.8 bits (54), Expect = 5.7
Identities = 13/47 (27%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
Frame = +3
Query: 363 YKVFDAIMKFKKEEIDDLLKKIGVTIKHE---DSDKDGKALLKVVMR 494
Y+V + + F+K+ +D ++K + E +S K G+ ++ VV R
Sbjct: 350 YEVIEISIPFQKDMLDTVVKVFSADARFEINNESQKTGEPVVSVVKR 396
>SPAC1071.02 |||TFIIH regulator |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1018
Score = 25.4 bits (53), Expect = 7.6
Identities = 9/28 (32%), Positives = 20/28 (71%)
Frame = -1
Query: 257 VHKLDKVNLEFVSIHLRELFEGESPPMK 174
+H ++K+N+E +++ + +F ESP +K
Sbjct: 716 LHFIEKLNIELLNLLINVVFVTESPGVK 743
>SPCC1393.06c |||rRNA processing protein Ipi1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 408
Score = 25.4 bits (53), Expect = 7.6
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -1
Query: 425 LLKEIINLLFLKFHDGIEHLVDRIQNVHAK 336
LL+ I ++FL H G+ H+ I+N K
Sbjct: 133 LLEPNIGMIFLYTHSGMTHITPSIRNDSTK 162
>SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated
membrane proteins, ESCRT 0 complex|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 610
Score = 25.4 bits (53), Expect = 7.6
Identities = 10/34 (29%), Positives = 16/34 (47%)
Frame = -1
Query: 224 VSIHLRELFEGESPPMKTRPETNRALARVDTHLT 123
+ + L+E+ + PP RP + D HLT
Sbjct: 269 IELSLKEMPQSREPPSYERPSEANVVISQDQHLT 302
>SPAC1A6.01c ||SPAC23C4.20c|human thyroid receptor interacting
protein homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 455
Score = 25.0 bits (52), Expect = 10.0
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +3
Query: 270 ENFFNPQTKKWSKQKDDDNKRS 335
E+ N +KWSK +DDD S
Sbjct: 432 ESILNKINQKWSKVQDDDGMPS 453
>SPBC1604.01 |mug158|SPBC1677.01c|sulfatase modifying factor 1
related|Schizosaccharomyces pombe|chr 2|||Manual
Length = 773
Score = 25.0 bits (52), Expect = 10.0
Identities = 9/34 (26%), Positives = 21/34 (61%)
Frame = +3
Query: 222 DKFKIDLVKLMNRLWGENFFNPQTKKWSKQKDDD 323
+KF+ +++ +N ++GEN F+ ++ D+D
Sbjct: 220 EKFEKNILASVNAVFGENLFDENDWEYKSVYDED 253
>SPBC13E7.02 |cwf24||GCN5-related N
acetyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 533
Score = 25.0 bits (52), Expect = 10.0
Identities = 10/34 (29%), Positives = 22/34 (64%)
Frame = -2
Query: 487 TTFSKALPSLSESSCLIVTPIFLRRSSISSFLNF 386
T+ + +PSL ++S I++ F+R + S+ ++F
Sbjct: 359 TSAQQKMPSLGDNSNTIISKYFIREITESNIVHF 392
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,982,609
Number of Sequences: 5004
Number of extensions: 64657
Number of successful extensions: 208
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 200
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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