BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= maV30828 (674 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 226 3e-60 SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 226 3e-60 SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma... 100 4e-22 SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce... 89 5e-19 SPBC1198.03c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 34 0.016 SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit Apc1|Sc... 33 0.050 SPCC4B3.07 |||nuclear pore associated protein|Schizosaccharomyce... 29 0.61 SPBC3B9.21 |dcp1||mRNA decapping complex subunit Dcp1|Schizosacc... 27 1.9 SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces pomb... 27 2.5 SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces p... 27 3.3 SPBC839.07 |ibp1||itty bitty phosphatase Ibp1|Schizosaccharomyce... 26 5.7 SPBPB8B6.03 ||SPAPB8B6.03, SPAPB8B6.03|acetamidase |Schizosaccha... 26 5.7 SPAC1071.02 |||TFIIH regulator |Schizosaccharomyces pombe|chr 1|... 25 7.6 SPCC1393.06c |||rRNA processing protein Ipi1|Schizosaccharomyces... 25 7.6 SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated memb... 25 7.6 SPAC1A6.01c ||SPAC23C4.20c|human thyroid receptor interacting pr... 25 10.0 SPBC1604.01 |mug158|SPBC1677.01c|sulfatase modifying factor 1 re... 25 10.0 SPBC13E7.02 |cwf24||GCN5-related N acetyltransferase|Schizosacch... 25 10.0 >SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosaccharomyces pombe|chr 3|||Manual Length = 842 Score = 226 bits (552), Expect = 3e-60 Identities = 104/187 (55%), Positives = 140/187 (74%), Gaps = 4/187 (2%) Frame = +3 Query: 48 YQTFQRIVENVNVIIATYNDDGGPMGEVRVDPSKGSVGFGSGLHGWAFTLKQFSEMYADK 227 YQ F R+VE+VNV+I+TY D +G+ +V P KG+V F SGLHGWAFT++QF+ YA K Sbjct: 175 YQNFARVVESVNVVISTYYDK--VLGDCQVFPDKGTVAFASGLHGWAFTVRQFANRYAKK 232 Query: 228 FKIDLVKLMNRLWGENFFNPQTKKWSKQKDD----DNKRSFCMYVLDPIYKVFDAIMKFK 395 F ID K+M RLWGEN+FNP+TKKWSK D N+R+F M++LDPIY++FDA+M + Sbjct: 233 FGIDRNKMMQRLWGENYFNPKTKKWSKSATDANGNSNQRAFNMFILDPIYRIFDAVMNSR 292 Query: 396 KEEIDDLLKKIGVTIKHEDSDKDGKALLKVVMRSWLPAGEALLQMIAIHLPSPVVAQKYR 575 K+E+ LL K+ VTIK ++ + +GKALLKVVMR +LPA +AL++MI +HLPSP AQ+YR Sbjct: 293 KDEVFTLLSKLEVTIKPDEKELEGKALLKVVMRKFLPAADALMEMIVLHLPSPKTAQQYR 352 Query: 576 MGDVIRG 596 + G Sbjct: 353 AETLYEG 359 Score = 53.6 bits (123), Expect = 2e-08 Identities = 22/31 (70%), Positives = 26/31 (83%) Frame = +1 Query: 580 EMLYEGPHDDEAAIGIKSCDPEAPLMMYVSK 672 E LYEGP DDE A+GI++CD APLM+YVSK Sbjct: 354 ETLYEGPMDDECAVGIRNCDANAPLMIYVSK 384 >SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elongation factor 2 |Schizosaccharomyces pombe|chr 1|||Manual Length = 842 Score = 226 bits (552), Expect = 3e-60 Identities = 104/187 (55%), Positives = 140/187 (74%), Gaps = 4/187 (2%) Frame = +3 Query: 48 YQTFQRIVENVNVIIATYNDDGGPMGEVRVDPSKGSVGFGSGLHGWAFTLKQFSEMYADK 227 YQ F R+VE+VNV+I+TY D +G+ +V P KG+V F SGLHGWAFT++QF+ YA K Sbjct: 175 YQNFARVVESVNVVISTYYDK--VLGDCQVFPDKGTVAFASGLHGWAFTVRQFANRYAKK 232 Query: 228 FKIDLVKLMNRLWGENFFNPQTKKWSKQKDD----DNKRSFCMYVLDPIYKVFDAIMKFK 395 F ID K+M RLWGEN+FNP+TKKWSK D N+R+F M++LDPIY++FDA+M + Sbjct: 233 FGIDRNKMMQRLWGENYFNPKTKKWSKSATDANGNSNQRAFNMFILDPIYRIFDAVMNSR 292 Query: 396 KEEIDDLLKKIGVTIKHEDSDKDGKALLKVVMRSWLPAGEALLQMIAIHLPSPVVAQKYR 575 K+E+ LL K+ VTIK ++ + +GKALLKVVMR +LPA +AL++MI +HLPSP AQ+YR Sbjct: 293 KDEVFTLLSKLEVTIKPDEKELEGKALLKVVMRKFLPAADALMEMIVLHLPSPKTAQQYR 352 Query: 576 MGDVIRG 596 + G Sbjct: 353 AETLYEG 359 Score = 53.6 bits (123), Expect = 2e-08 Identities = 22/31 (70%), Positives = 26/31 (83%) Frame = +1 Query: 580 EMLYEGPHDDEAAIGIKSCDPEAPLMMYVSK 672 E LYEGP DDE A+GI++CD APLM+YVSK Sbjct: 354 ETLYEGPMDDECAVGIRNCDANAPLMIYVSK 384 >SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Manual Length = 1000 Score = 99.5 bits (237), Expect = 4e-22 Identities = 64/215 (29%), Positives = 100/215 (46%), Gaps = 15/215 (6%) Frame = +3 Query: 3 MDRXXXXXXXXXXXXYQTFQRIVENVNVIIATY----------NDDGGPMGEVRVDPSKG 152 MDR + R+VE VN +I T+ ND+ + P +G Sbjct: 156 MDRLITELKLSPIEAHYHLLRLVEQVNAVIGTFYTGELMQLADNDEVISDEGIYFAPEQG 215 Query: 153 SVGFGSGLHGWAFTLKQFSEMYADKFKIDLVKLMNRLWGENFFNPQTKKWSKQKDDDNKR 332 +V F S GWAF L QFSE Y K + L LWG+ + +P+TK+ + K +R Sbjct: 216 NVVFASAYDGWAFCLDQFSEFYEKKLGLKQKALTKCLWGDYYLDPKTKRVLQPKHLQGRR 275 Query: 333 ---SFCMYVLDPIYKVFD-AIMKFKKEEIDDLLKKIGVTIKHED-SDKDGKALLKVVMRS 497 F +VL+ ++ V++ A+ E I+ ++K + + + D KD + LL + + Sbjct: 276 LKPMFVQFVLENLWAVYESAVSNRNLENIEKIIKALNIKVLPRDIKSKDPRNLLLAIFQQ 335 Query: 498 WLPAGEALLQMIAIHLPSPVVAQKYRMGDVIRGTP 602 WLP A+L +PSP+ AQ R V+ TP Sbjct: 336 WLPLSTAILLTAIREIPSPINAQANRARKVLSSTP 370 >SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces pombe|chr 2|||Manual Length = 983 Score = 89.0 bits (211), Expect = 5e-19 Identities = 51/171 (29%), Positives = 90/171 (52%), Gaps = 2/171 (1%) Frame = +3 Query: 48 YQTFQRIVENVNVIIATYNDDGGPMGEVRVDPSKGSVGFGSGLHGWAFTLKQFSEMYADK 227 Y + +++ VN I + D + RV P G+V F S G+ FTL F+++Y D+ Sbjct: 286 YHKLRHVIDEVNDNICQISKDL----KYRVSPELGNVCFASCDLGYCFTLSSFAKLYIDR 341 Query: 228 FK-IDLVKLMNRLWGENFFNPQTKKWSKQK-DDDNKRSFCMYVLDPIYKVFDAIMKFKKE 401 ID+ RLWG+ +F+ +T+K++KQ D RSF ++L+P+YK+ + + E Sbjct: 342 HGGIDVDLFSKRLWGDIYFDSKTRKFAKQSLDGSGVRSFVHFILEPLYKLHTLTISDEAE 401 Query: 402 EIDDLLKKIGVTIKHEDSDKDGKALLKVVMRSWLPAGEALLQMIAIHLPSP 554 ++ L + +K +D D K LL+++ S+ + + H+PSP Sbjct: 402 KLKKHLSSFQIYLKPKDYLLDPKPLLQLICASFFGFPVGFVNAVTRHIPSP 452 >SPBC1198.03c |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual Length = 249 Score = 34.3 bits (75), Expect = 0.016 Identities = 12/35 (34%), Positives = 19/35 (54%) Frame = +3 Query: 186 AFTLKQFSEMYADKFKIDLVKLMNRLWGENFFNPQ 290 A+ + + E Y DK K ++K +W FFNP+ Sbjct: 153 AYVISYYVEKYVDKAKFPIIKGFIEMWNRKFFNPR 187 >SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit Apc1|Schizosaccharomyces pombe|chr 2|||Manual Length = 1458 Score = 32.7 bits (71), Expect = 0.050 Identities = 15/45 (33%), Positives = 29/45 (64%), Gaps = 1/45 (2%) Frame = +3 Query: 189 FTLKQFS-EMYADKFKIDLVKLMNRLWGENFFNPQTKKWSKQKDD 320 FT+ + + E Y+ ++ + ++L+NRL ++F +P+T KW K D Sbjct: 620 FTVLEIAAEEYSPNWESEELRLVNRLDVDSFLHPKTPKWVFNKQD 664 >SPCC4B3.07 |||nuclear pore associated protein|Schizosaccharomyces pombe|chr 3|||Manual Length = 393 Score = 29.1 bits (62), Expect = 0.61 Identities = 18/81 (22%), Positives = 39/81 (48%), Gaps = 4/81 (4%) Frame = +3 Query: 195 LKQFSEMYADKFKIDLVKLMNRLWGENFFNPQTKKWSK----QKDDDNKRSFCMYVLDPI 362 L QF + +++ F +D+ ++ LW ++ +P T + K + +N +F Y +D Sbjct: 242 LFQFGDQFSEAFLLDVCSIITALWLKSVVDPNTPAYYKLIAQEAVLNNYTTFAEYYMD-- 299 Query: 363 YKVFDAIMKFKKEEIDDLLKK 425 ++ + +DDL+ K Sbjct: 300 ------LLDNSESNVDDLINK 314 >SPBC3B9.21 |dcp1||mRNA decapping complex subunit Dcp1|Schizosaccharomyces pombe|chr 2|||Manual Length = 127 Score = 27.5 bits (58), Expect = 1.9 Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%) Frame = -1 Query: 434 DSNLLKEIINLLFLKFH-DGIEHLVDRIQNV 345 D N+L+ +NL LKFH IE ++D +V Sbjct: 3 DENILRNAVNLQVLKFHYPEIESIIDIASHV 33 >SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 775 Score = 27.1 bits (57), Expect = 2.5 Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 4/75 (5%) Frame = +3 Query: 270 ENFFNPQTKKWSKQKDDDNKRSFCMYVLDPIYKVFDAIMKFKKEEIDDLLKKIGVTIK-- 443 +++ + K +K+K NK++ +LDPI ++ EI L K +G+ K Sbjct: 72 DDYLDAHRKSSTKKKSSQNKQAKESKLLDPIAFQHKIALEEDDREIAHLEKMLGIKSKDK 131 Query: 444 --HEDSDKDGKALLK 482 H DK+ LL+ Sbjct: 132 SAHSKIDKEFGWLLE 146 >SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces pombe|chr 1|||Manual Length = 1272 Score = 26.6 bits (56), Expect = 3.3 Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 3/82 (3%) Frame = -2 Query: 466 PSLSESSCLIVTPIFLRRSSISSFLNFMMASNTL*IGSKTYMQNERLLSSSFCFDHFFV* 287 P +S S C+ +F+ S S +F+M S L + S+ Y + + S+C + + Sbjct: 417 PFISSSLCISPRYMFVVNSETVSVGSFLMVSEQLQMLSERYGFFDSIKFGSYCVSNLSIF 476 Query: 286 G---LKKFSPHNLFISLTRSIL 230 L+K S NL ++L +L Sbjct: 477 PKLLLEKTSVINLIMALYVKLL 498 >SPBC839.07 |ibp1||itty bitty phosphatase Ibp1|Schizosaccharomyces pombe|chr 2|||Manual Length = 138 Score = 25.8 bits (54), Expect = 5.7 Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 3/43 (6%) Frame = -1 Query: 200 FEGESPPMKTRPETNRALARVDTH---LTHGTTIIVICGYNDV 81 +EGE P R ++ LA VD H L ++IV C Y+ V Sbjct: 33 YEGERIPGSVRIPSDTFLASVDQHVDDLMKKRSLIVHCTYSQV 75 >SPBPB8B6.03 ||SPAPB8B6.03, SPAPB8B6.03|acetamidase |Schizosaccharomyces pombe|chr 2|||Manual Length = 547 Score = 25.8 bits (54), Expect = 5.7 Identities = 13/47 (27%), Positives = 26/47 (55%), Gaps = 3/47 (6%) Frame = +3 Query: 363 YKVFDAIMKFKKEEIDDLLKKIGVTIKHE---DSDKDGKALLKVVMR 494 Y+V + + F+K+ +D ++K + E +S K G+ ++ VV R Sbjct: 350 YEVIEISIPFQKDMLDTVVKVFSADARFEINNESQKTGEPVVSVVKR 396 >SPAC1071.02 |||TFIIH regulator |Schizosaccharomyces pombe|chr 1|||Manual Length = 1018 Score = 25.4 bits (53), Expect = 7.6 Identities = 9/28 (32%), Positives = 20/28 (71%) Frame = -1 Query: 257 VHKLDKVNLEFVSIHLRELFEGESPPMK 174 +H ++K+N+E +++ + +F ESP +K Sbjct: 716 LHFIEKLNIELLNLLINVVFVTESPGVK 743 >SPCC1393.06c |||rRNA processing protein Ipi1|Schizosaccharomyces pombe|chr 3|||Manual Length = 408 Score = 25.4 bits (53), Expect = 7.6 Identities = 11/30 (36%), Positives = 17/30 (56%) Frame = -1 Query: 425 LLKEIINLLFLKFHDGIEHLVDRIQNVHAK 336 LL+ I ++FL H G+ H+ I+N K Sbjct: 133 LLEPNIGMIFLYTHSGMTHITPSIRNDSTK 162 >SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated membrane proteins, ESCRT 0 complex|Schizosaccharomyces pombe|chr 1|||Manual Length = 610 Score = 25.4 bits (53), Expect = 7.6 Identities = 10/34 (29%), Positives = 16/34 (47%) Frame = -1 Query: 224 VSIHLRELFEGESPPMKTRPETNRALARVDTHLT 123 + + L+E+ + PP RP + D HLT Sbjct: 269 IELSLKEMPQSREPPSYERPSEANVVISQDQHLT 302 >SPAC1A6.01c ||SPAC23C4.20c|human thyroid receptor interacting protein homolog|Schizosaccharomyces pombe|chr 1|||Manual Length = 455 Score = 25.0 bits (52), Expect = 10.0 Identities = 10/22 (45%), Positives = 13/22 (59%) Frame = +3 Query: 270 ENFFNPQTKKWSKQKDDDNKRS 335 E+ N +KWSK +DDD S Sbjct: 432 ESILNKINQKWSKVQDDDGMPS 453 >SPBC1604.01 |mug158|SPBC1677.01c|sulfatase modifying factor 1 related|Schizosaccharomyces pombe|chr 2|||Manual Length = 773 Score = 25.0 bits (52), Expect = 10.0 Identities = 9/34 (26%), Positives = 21/34 (61%) Frame = +3 Query: 222 DKFKIDLVKLMNRLWGENFFNPQTKKWSKQKDDD 323 +KF+ +++ +N ++GEN F+ ++ D+D Sbjct: 220 EKFEKNILASVNAVFGENLFDENDWEYKSVYDED 253 >SPBC13E7.02 |cwf24||GCN5-related N acetyltransferase|Schizosaccharomyces pombe|chr 2|||Manual Length = 533 Score = 25.0 bits (52), Expect = 10.0 Identities = 10/34 (29%), Positives = 22/34 (64%) Frame = -2 Query: 487 TTFSKALPSLSESSCLIVTPIFLRRSSISSFLNF 386 T+ + +PSL ++S I++ F+R + S+ ++F Sbjct: 359 TSAQQKMPSLGDNSNTIISKYFIREITESNIVHF 392 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,982,609 Number of Sequences: 5004 Number of extensions: 64657 Number of successful extensions: 208 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 193 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 200 length of database: 2,362,478 effective HSP length: 70 effective length of database: 2,012,198 effective search space used: 309878492 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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