Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30828
         (674 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)                   250   8e-67
SB_19388| Best HMM Match : No HMM Matches (HMM E-Value=.)             109   2e-24
SB_35448| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-10)              90   1e-18
SB_40813| Best HMM Match : No HMM Matches (HMM E-Value=.)              71   1e-12
SB_32768| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.85 
SB_34038| Best HMM Match : Ubie_methyltran (HMM E-Value=0.0014)        29   3.4  
SB_2806| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.5  
SB_16431| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.0  
SB_41193| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.0  
SB_38321| Best HMM Match : ZZ (HMM E-Value=8.1e-09)                    28   7.9  
SB_25617| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  

>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
          Length = 833

 Score =  250 bits (612), Expect = 8e-67
 Identities = 115/191 (60%), Positives = 141/191 (73%)
 Frame = +3

Query: 3   MDRXXXXXXXXXXXXYQTFQRIVENVNVIIATYNDDGGPMGEVRVDPSKGSVGFGSGLHG 182
           MDR            YQTF RIVE++NVIIATY+D+ GPMG ++V P KG+V FGSGLHG
Sbjct: 161 MDRALLELQLDQEDLYQTFARIVESINVIIATYSDEDGPMGNIQVGPEKGTVAFGSGLHG 220

Query: 183 WAFTLKQFSEMYADKFKIDLVKLMNRLWGENFFNPQTKKWSKQKDDDNKRSFCMYVLDPI 362
           WAFTLKQ SE+Y+ KFKI   KLM RLWG+ F N + KKW K++   N R F  +VLDPI
Sbjct: 221 WAFTLKQISEIYSAKFKIPPAKLMKRLWGDQFINAEDKKWKKEQATGNVRGFNQFVLDPI 280

Query: 363 YKVFDAIMKFKKEEIDDLLKKIGVTIKHEDSDKDGKALLKVVMRSWLPAGEALLQMIAIH 542
           +K+FDAIM FKKE   +LL+K+ + +  E+ + +GK L K VMR WLPAGEA+LQMIAIH
Sbjct: 281 FKMFDAIMNFKKEATANLLEKLKIKLTVEERELEGKPLFKTVMRKWLPAGEAMLQMIAIH 340

Query: 543 LPSPVVAQKYR 575
           LPSPVV+QKYR
Sbjct: 341 LPSPVVSQKYR 351



 Score = 42.7 bits (96), Expect = 3e-04
 Identities = 16/22 (72%), Positives = 19/22 (86%)
 Frame = +1

Query: 580 EMLYEGPHDDEAAIGIKSCDPE 645
           E+LYEGP DD  A+GIK+CDPE
Sbjct: 353 ELLYEGPQDDAVALGIKACDPE 374


>SB_19388| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 227

 Score =  109 bits (262), Expect = 2e-24
 Identities = 47/76 (61%), Positives = 56/76 (73%)
 Frame = +3

Query: 141 PSKGSVGFGSGLHGWAFTLKQFSEMYADKFKIDLVKLMNRLWGENFFNPQTKKWSKQKDD 320
           P KG+V FGSGLHGWAFTLKQ SE+Y+ KFKI   KLM RLWG+ F N + KKW K++  
Sbjct: 34  PEKGTVAFGSGLHGWAFTLKQISEIYSAKFKIPPAKLMKRLWGDQFINAEDKKWKKEQAT 93

Query: 321 DNKRSFCMYVLDPIYK 368
            N R F  +VLDPI+K
Sbjct: 94  GNVRGFNQFVLDPIFK 109


>SB_35448| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-10)
          Length = 563

 Score = 90.2 bits (214), Expect = 1e-18
 Identities = 49/145 (33%), Positives = 78/145 (53%), Gaps = 6/145 (4%)
 Frame = +3

Query: 141 PSKGSVGFGSGLHGWAFTLKQFSEMYADKFKIDLVKLMNRLWGENFFNPQTKKWSKQKDD 320
           P  G+V F S + GW F++K F+ +Y+ K  +    L   LWG+ + + +TK+  K+   
Sbjct: 217 PDLGNVVFSSAIDGWGFSIKDFANLYSKKLGLKAEILQKTLWGDFYLDSKTKRIFKKAQL 276

Query: 321 DNKRS-FCMYVLDPIYKVFDAIM----KFKKEEIDDLLK-KIGVTIKHEDSDKDGKALLK 482
            NK+  F  ++LD I+ ++DA++    K K E+I + LK KI V    +    D +  L 
Sbjct: 277 KNKKPLFVQFILDNIWALYDAVVIRRDKVKSEQISNSLKLKISV---RDSRSSDRRVYLH 333

Query: 483 VVMRSWLPAGEALLQMIAIHLPSPV 557
            +   WLP   ALL M+   LPSP+
Sbjct: 334 AICSQWLPLSSALLSMVVDKLPSPL 358


>SB_40813| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 809

 Score = 70.5 bits (165), Expect = 1e-12
 Identities = 32/115 (27%), Positives = 68/115 (59%), Gaps = 3/115 (2%)
 Frame = +3

Query: 48  YQTFQRIVENVNVIIATYNDDGGPMGEVRVDPSKGSVGFGSGLHGWAFTLKQFSEMYADK 227
           Y   + +++ VN +++ +++      ++ + P  G+V F S  + + FTL  F+++Y D 
Sbjct: 206 YYKLKHVIDEVNGLLSVFSEGAD---DLVISPLLGNVCFASSSYHFCFTLLSFAKLYVDS 262

Query: 228 F--KIDLVKLMNRLWGENFFNPQTKKWSKQKD-DDNKRSFCMYVLDPIYKVFDAI 383
           F   ID      RLWG+ +F+ +T+K++++     ++RSF  ++L+P+YK+F  +
Sbjct: 263 FGGNIDPQDFAQRLWGDMYFSSKTRKFTRKAPLSTSQRSFVEFILEPMYKIFGQV 317



 Score = 29.1 bits (62), Expect = 3.4
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +1

Query: 589 YEGPHDDEAAIGIKSCDPEAPLMMYVSK 672
           Y GP D +    + +CDP+  LM++ +K
Sbjct: 321 YTGPLDSDIVDAMNNCDPDGVLMVHTTK 348


>SB_32768| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1393

 Score = 31.1 bits (67), Expect = 0.85
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = -2

Query: 241 RSILNLSAYISENCLRVKAHP*RPDPKPTEPLLGSTRTSPMGPPSS 104
           + IL+    +  N   V+    +P PK T P+ G+ +  PMGPP S
Sbjct: 619 KQILDAQRLLPSNSQNVEDSWRKPRPKSTPPM-GAVQVLPMGPPPS 663


>SB_34038| Best HMM Match : Ubie_methyltran (HMM E-Value=0.0014)
          Length = 267

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +3

Query: 204 FSEMYADKFKIDLVKLMNRLWGENF 278
           FS+MYAD+   D  +    LWGE F
Sbjct: 127 FSDMYADRAVSDEARKNKALWGEGF 151


>SB_2806| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 600

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 13/54 (24%), Positives = 24/54 (44%)
 Frame = +3

Query: 279 FNPQTKKWSKQKDDDNKRSFCMYVLDPIYKVFDAIMKFKKEEIDDLLKKIGVTI 440
           ++P T KW        +R  C  +   I+  +    K  +  ++D  K +GVT+
Sbjct: 443 YDPHTNKWKMVSPMLKRRGECFAIRKGIFVEWTLCFKAMEMNLEDQNKGVGVTV 496


>SB_16431| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 790

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +3

Query: 363 YKVFDAIMKFKKEEIDDLLKKIGVTI 440
           Y+    I K  K+EIDDL KK+G+ +
Sbjct: 482 YEEHPEITKQSKQEIDDLRKKMGIKV 507


>SB_41193| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 65

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +3

Query: 498 WLPAGEALLQMIAIHLPSPV 557
           WLP   ALL M+   LPSP+
Sbjct: 3   WLPLSSALLSMVVDKLPSPL 22


>SB_38321| Best HMM Match : ZZ (HMM E-Value=8.1e-09)
          Length = 584

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = -1

Query: 218 IHLRELFEGESPPMKTRPETNRALARVDTH-LTHGTTIIVICGYNDVNI 75
           + LRE+ EG  PP K     + +L+  D+   T G+T++     +D ++
Sbjct: 307 VELREVLEGMVPPEKVESALSASLSLTDSEPSTGGSTVLAEIKVSDASM 355


>SB_25617| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 479

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -2

Query: 139 STRTSPMGPPSSLYVAIMTLTFSTIRWNV 53
           +T T P  PP+SLY   +  +  T+ W+V
Sbjct: 262 NTCTGPPSPPTSLYKPFLNSSAITLSWSV 290


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,624,321
Number of Sequences: 59808
Number of extensions: 499591
Number of successful extensions: 1566
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1420
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1562
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1733301648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)