Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30828
         (674 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    27   0.22 
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               21   8.1  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   8.1  

>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 26.6 bits (56), Expect = 0.22
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = +3

Query: 312 KDDDNKRSFCMYVLDPIYKVFDAIMKFKKEEIDDLLKKIGV 434
           KD+ NK+   +   + +YK+ D I    K+EI D+L ++ V
Sbjct: 546 KDEANKKGVSLRFYNVVYKLIDNI----KKEIYDILPEVDV 582


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 7/26 (26%), Positives = 13/26 (50%)
 Frame = +3

Query: 483 VVMRSWLPAGEALLQMIAIHLPSPVV 560
           +V  SW+P+    +Q      P P++
Sbjct: 471 LVWNSWMPSIRGAIQQWTCRQPEPLI 496


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -3

Query: 69   QYAGTSGIVLQLQVG 25
            +Y   SG+V+QLQ G
Sbjct: 1549 EYGAVSGLVVQLQRG 1563


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 197,808
Number of Sequences: 438
Number of extensions: 4611
Number of successful extensions: 9
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20464920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)