Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30827
         (691 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0439 + 19096711-19096713,19096819-19096893,19097037-190971...    29   4.6  
04_03_0658 + 18447986-18448117,18448204-18448317,18448388-184485...    28   6.1  

>12_02_0439 +
           19096711-19096713,19096819-19096893,19097037-19097111,
           19097225-19097297,19097536-19097580,19098217-19098328,
           19098794-19098866,19099178-19099222,19100216-19100271,
           19100370-19100545,19101289-19101476
          Length = 306

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 12/27 (44%), Positives = 19/27 (70%)
 Frame = +2

Query: 575 SYYNIINRSKLKYIIFLILLEEETQFY 655
           SY NI N+  +KY + L+L++EE + Y
Sbjct: 262 SYRNINNKFSVKYYLNLVLVDEEDRRY 288


>04_03_0658 +
           18447986-18448117,18448204-18448317,18448388-18448507,
           18448589-18449215,18449289-18449462,18449545-18449809,
           18449889-18449959,18450043-18450145,18450221-18450280,
           18450533-18450744,18450830-18450901,18451446-18451502,
           18451598-18451882,18452359-18452371,18452396-18452463,
           18452649-18452747,18452836-18452967,18453038-18453141,
           18453234-18453423,18453519-18453524
          Length = 967

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
 Frame = -1

Query: 691 LQDVQKIKINVDIKLGLLLQQDQKN-DVFKFRSVNNIVIAPAKTGSDNNNKNAVIPTAHT 515
           + D +  K+ VD+ L LL    + N D      V+ +  +   T  +N+ KN V  +AH+
Sbjct: 442 MADERPKKLLVDV-LALLADASKSNADTNLSSEVDKLSKSCNPTDQNNDEKNDVT-SAHS 499

Query: 514 NKGN*SNDILFNR 476
            K N  NDI  NR
Sbjct: 500 PKDNMDNDIDDNR 512


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,119,979
Number of Sequences: 37544
Number of extensions: 232126
Number of successful extensions: 408
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 401
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 408
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1756684372
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)