Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30826
         (720 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces...    28   1.2  
SPCC70.04c |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    27   2.7  
SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pm...    26   4.7  
SPCC4G3.15c |||CCR4-Not complex subunit Not2 |Schizosaccharomyce...    26   6.2  
SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence orphan|Schizos...    26   6.2  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    26   6.2  

>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1727

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 16/52 (30%), Positives = 29/52 (55%)
 Frame = -2

Query: 476  NSFQSSAASATRSLGKLVKLNKMVGPLDLNMDIGSHDSDSKTIREKCTLLSN 321
            NS  S+++ A+R   +LV    ++   +LN +IG   S+ +T++ K   L N
Sbjct: 1310 NSSTSTSSDASRLKNELVSKENLIE--ELNQEIGHLKSELETVKSKSEDLEN 1359


>SPCC70.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 244

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
 Frame = -1

Query: 636 TKRNIKQHN-PYKFTAPTLSTSNLGVVHTLL*RTMWSVCVININVWVTYS*ISNEFISKL 460
           TK ++   N PYK   P L     G+ +T     +W  CVI   ++ +Y  +SN  + + 
Sbjct: 64  TKSSLSIGNFPYKEFDPVLKFP--GIHYTYSRERLWGTCVILSTLFWSYYVLSNSELLEF 121

Query: 459 SCLRYKI 439
               Y +
Sbjct: 122 EASEYSL 128


>SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pmc1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1292

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 11/39 (28%), Positives = 19/39 (48%)
 Frame = +2

Query: 59  YNPRDNDVNFATSAFVENPATSCDKYRQALEQSLQDMHD 175
           YN R+N     +S     P++S   Y  A   S+++ +D
Sbjct: 37  YNQRENSSRSGSSTISREPSSSGTMYPMASRDSMKESYD 75


>SPCC4G3.15c |||CCR4-Not complex subunit Not2 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 176

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = +1

Query: 385 IFRSNGPTILFNFTSLPRDLVAEAA 459
           IF+ +  T+ + F ++PRD++ EAA
Sbjct: 81  IFQFSDETLFYIFYTMPRDVMQEAA 105


>SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence
           orphan|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1563

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +3

Query: 24  TGPSCRTATPLAITHETTTSTSQLPHSSKIPLPAVTNT 137
           T  SC  AT L +T   +TSTS  P ++ + +   T T
Sbjct: 166 TSTSCNPATVLIVTTSGSTSTSCPPPTTILIVTVPTTT 203


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 16/51 (31%), Positives = 27/51 (52%)
 Frame = +3

Query: 3   SAMGSCATGPSCRTATPLAITHETTTSTSQLPHSSKIPLPAVTNTGKLWSS 155
           ++  S +T  S  + TP+     T TSTS++  S+ IPL +   T   ++S
Sbjct: 608 NSTSSSSTQVSWNSTTPI-----TGTSTSKVTSSTSIPLTSTNRTSTTFTS 653



 Score = 25.4 bits (53), Expect = 8.2
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +3

Query: 15  SCATGPSCRTATPLAITHETTTSTSQLPHSSKIPLPAVTNT 137
           SC T  S   +TP+     ++TS++    SS  PLP+ + +
Sbjct: 76  SCTTDTSA--STPIITESTSSTSSASTTGSSSSPLPSTSTS 114


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,964,392
Number of Sequences: 5004
Number of extensions: 62049
Number of successful extensions: 171
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)