Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30825
         (703 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3B9.03 |||signal recognition particle receptor alpha subunit...    27   2.0  
SPAC1486.09 |||ribosome biogenesis protein Nob1 |Schizosaccharom...    27   3.4  
SPAPB1A10.09 |ase1||microtubule-associated protein Ase1 |Schizos...    26   6.0  
SPBC3E7.05c |||conserved eukaryotic protein|Schizosaccharomyces ...    25   7.9  

>SPBC3B9.03 |||signal recognition particle receptor alpha subunit
           Srp101|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 547

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = -2

Query: 492 TAGTRHFVY*LLYCLSTYTPVTKFEKRFHVTDA 394
           TAG RH    L+  L  +T  TK +K F V +A
Sbjct: 438 TAGRRHNDQRLMGSLEKFTKATKLDKIFQVAEA 470


>SPAC1486.09 |||ribosome biogenesis protein Nob1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 10/35 (28%), Positives = 21/35 (60%)
 Frame = +2

Query: 452 QYRSQ*TKWRVPAVKFGFSGSRAATNPRLRRNEPD 556
           +++++ TK+ +P    G S  +   NP LR ++P+
Sbjct: 301 EWKTRGTKYSLPKPVHGTSNGKGKKNPVLREDQPE 335


>SPAPB1A10.09 |ase1||microtubule-associated protein Ase1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 731

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 15/58 (25%), Positives = 27/58 (46%)
 Frame = +2

Query: 173 RTIMTSTLSVRDRASPSDVV*VDIKKLIHSQNKIQCVTGSPIDNIRSVNRSHP*SFRI 346
           R  + ST SVR  +         + ++ ++QN  + ++  P     + NR HP + RI
Sbjct: 500 RVAVPSTPSVRSASRAMTSPRTPLPRVKNTQNPSRSISAEPPSATSTANRRHPTANRI 557


>SPBC3E7.05c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 550

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -1

Query: 541 PEPRVGSSTRTTEAKFHRRYSPFCLL 464
           P+P  GSS ++  +KF +R+    LL
Sbjct: 48  PKPEEGSSNKSNSSKFRKRFLLLFLL 73


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,680,199
Number of Sequences: 5004
Number of extensions: 51976
Number of successful extensions: 128
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)