Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30825
         (703 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0402 - 17304828-17305622                                         29   2.7  
11_01_0461 + 3569700-3572373,3572477-3572847                           28   6.2  
08_02_1100 + 24303920-24304001,24304080-24304576,24304745-243048...    28   6.2  
07_01_0755 - 5806614-5806939,5807039-5809415                           28   8.3  

>09_04_0402 - 17304828-17305622
          Length = 264

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = +3

Query: 477 GEYRR*NLASVVRVLLPTRGSGATNPTENRQVHDRRAHELSTHGP 611
           G++ +  +AS+V  LL +         E R+   RR H  S HGP
Sbjct: 147 GQWVKKYMASMVEHLLASFSRHGGGEREKREQQRRRPHSFSAHGP 191


>11_01_0461 + 3569700-3572373,3572477-3572847
          Length = 1014

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 34/131 (25%), Positives = 57/131 (43%), Gaps = 2/131 (1%)
 Frame = +3

Query: 60  KQLEVLIITVFLQINCVANT*SVCSLLTRIRCSKNLLSGQS*HLPYQCG-IEPRQVTSFE 236
           KQLE L+++       + +T   C  +  I   +N LSG    +P   G +E  QV +  
Sbjct: 512 KQLEHLVLSSNNLSGVIPDTLGNCESIEEIELDQNFLSGS---IPTSFGNMESLQVLNMS 568

Query: 237 SILKS*SIVR-IKFSA*RDRLSITFDR*IVRIPRASEFRTSTSKFDLKIFKFAPRPLRGN 413
             L S SI + I      ++L ++F+     +P    F  +T+     I+    R L G 
Sbjct: 569 HNLLSGSIPKSIGSLKYLEQLDLSFNNLEGEVPEIGIFNNTTA-----IWIAGNRGLCGG 623

Query: 414 VFRIL*PVCKW 446
             ++  PVC +
Sbjct: 624 ATKLHLPVCTY 634


>08_02_1100 +
           24303920-24304001,24304080-24304576,24304745-24304842,
           24304982-24305813,24306463-24306645,24306726-24307346
          Length = 770

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 12/49 (24%), Positives = 25/49 (51%)
 Frame = -3

Query: 428 QNSKNVST*RTRREFKYFQIEFRSTRSKFGSSRDANDLPIECYR*AIPL 282
           ++S+N  +   + E  ++   + S R   G+  + +D PIE  R  +P+
Sbjct: 15  RSSENPESRDEKTEIPFYAQRYESVRCSCGAEEEVDDCPIEEVRLTVPI 63


>07_01_0755 - 5806614-5806939,5807039-5809415
          Length = 900

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 19/58 (32%), Positives = 30/58 (51%)
 Frame = +3

Query: 66  LEVLIITVFLQINCVANT*SVCSLLTRIRCSKNLLSGQS*HLPYQCGIEPRQVTSFES 239
           L+VLI+TV      + +T   CS L+ +R   N L+G    +P   G +   +T FE+
Sbjct: 241 LQVLILTVNRLNGTIPDTIGRCSALSNVRIGNNRLAGA---IPASIG-DATSLTYFEA 294


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,834,976
Number of Sequences: 37544
Number of extensions: 326077
Number of successful extensions: 706
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 689
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 706
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1803843684
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)