Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30825
         (703 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51009| Best HMM Match : 7tm_1 (HMM E-Value=2.8e-14)                 29   2.8  
SB_25853| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.4  
SB_37803| Best HMM Match : WH2 (HMM E-Value=1.8e-10)                   28   6.4  

>SB_51009| Best HMM Match : 7tm_1 (HMM E-Value=2.8e-14)
          Length = 579

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 3/31 (9%)
 Frame = +3

Query: 543 ATNPTENRQVHDRRAHE---LSTHGPHRVNG 626
           A  P+ N  +  + AHE   +STHGPH V G
Sbjct: 526 AKGPSLNGPIRAQEAHEHWVVSTHGPHAVEG 556


>SB_25853| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 92

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
 Frame = -1

Query: 406 RNGRGANLNIFKSNFEVLVRNSEALGMRTIYRSNVIDRRSR-YALNFI 266
           R G    L  F  +F VL         R +YRS ++D+R   Y LN++
Sbjct: 40  RFGSRDQLGYFWGSFRVLGSFRVLGSFRVLYRSLIVDKRGHSYCLNYV 87


>SB_37803| Best HMM Match : WH2 (HMM E-Value=1.8e-10)
          Length = 514

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = +1

Query: 577 IGAPTNFQHTGHIG 618
           IG P NFQH GH+G
Sbjct: 200 IGNPENFQHVGHMG 213


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,079,535
Number of Sequences: 59808
Number of extensions: 394509
Number of successful extensions: 871
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 754
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 871
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1841633001
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)