Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30825
         (703 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    24   1.6  
AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    23   3.7  
AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    21   8.6  

>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 15/54 (27%), Positives = 30/54 (55%)
 Frame = +2

Query: 164 SVIRTIMTSTLSVRDRASPSDVV*VDIKKLIHSQNKIQCVTGSPIDNIRSVNRS 325
           +V+R      +S+    S ++ + VDI KL++ +N  +  T S   N+ +VN++
Sbjct: 493 AVVRQSEEEAVSLLINFSKNNTI-VDISKLVNKRNNAKIYTSSVNSNL-TVNQT 544


>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
           protein.
          Length = 190

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +2

Query: 497 FGFSGSRAATNPRLRRNEPDGE 562
           FGF+G+    +P + + EP G+
Sbjct: 70  FGFAGTPGYLSPEVLKKEPYGK 91


>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +3

Query: 516 VLLPTRGSGATNPTENRQVHDRRAH 590
           +LLP RG+G +N T    ++D ++H
Sbjct: 138 LLLPVRGAGKSNIT----MYDLKSH 158


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,758
Number of Sequences: 438
Number of extensions: 3674
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21561255
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)