Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30825
         (703 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g28490.1 68417.m04076 leucine-rich repeat transmembrane prote...    29   3.0  
At4g28140.1 68417.m04035 AP2 domain-containing transcription fac...    29   3.9  
At3g49060.1 68416.m05360 protein kinase family protein / U-box d...    29   3.9  
At4g30000.1 68417.m04268 dihydropterin pyrophosphokinase, putati...    28   6.9  

>At4g28490.1 68417.m04076 leucine-rich repeat transmembrane protein
           kinase, putative
          Length = 999

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 17/42 (40%), Positives = 22/42 (52%)
 Frame = +3

Query: 63  QLEVLIITVFLQINCVANT*SVCSLLTRIRCSKNLLSGQS*H 188
           +LE LI+        ++N    C  LTR+R S N LSGQ  H
Sbjct: 380 KLEYLILIDNSFSGEISNNLGKCKSLTRVRLSNNKLSGQIPH 421


>At4g28140.1 68417.m04035 AP2 domain-containing transcription
           factor, putative similar to AP2 domain containing
           protein RAP2.4 - Arabidopsis thaliana, PID:g2281633
          Length = 292

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 18/67 (26%), Positives = 30/67 (44%)
 Frame = +2

Query: 491 VKFGFSGSRAATNPRLRRNEPDGE*TGP*SARPRTFNTRAT*GQRMSTFPASLLHSMQNQ 670
           V   F G  ++T+PR  +            +RP+ +   ++    +  FP SL  ++QNQ
Sbjct: 17  VDHSFGGEASSTSPRSMKKMKS-------PSRPKPYFQSSSSPYSLEAFPFSLDPTLQNQ 69

Query: 671 MQSKGGY 691
            Q  G Y
Sbjct: 70  QQQLGSY 76


>At3g49060.1 68416.m05360 protein kinase family protein / U-box
           domain-containing protein contains Pfam profile: PF00069
           Eukaryotic protein kinase domain
          Length = 805

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 15/65 (23%), Positives = 32/65 (49%)
 Frame = +1

Query: 310 IGKSFASLELPNFERVLRNSI*KYLNSRRVRYVETFFEFCNRCVSGQTVQKSVNKMASTG 489
           +G SF   ++   ERV +  + + +NS      ET  +    C++GQ +++ + ++ +  
Sbjct: 64  VGGSFKKHDVKVIERVEKPKVDELMNSYLQLLSETEIQTDKLCIAGQNIEECIVELIARH 123

Query: 490 GEIWL 504
              WL
Sbjct: 124 KIKWL 128


>At4g30000.1 68417.m04268 dihydropterin pyrophosphokinase, putative
           / dihydropteroate synthase, putative / DHPS, putative
           similar to dihydropterin pyrophosphokinase
           /dihydropteroate synthase [Pisum sativum]
           gi|1934972|emb|CAA69903
          Length = 554

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 20/81 (24%), Positives = 33/81 (40%), Gaps = 5/81 (6%)
 Frame = -1

Query: 550 FVAPEPRVGSSTRTTEAKFHRRYSPFCL-LTSVLSVHLHTGYK----IRKTFPRNGRGAN 386
           F+ P P V S+   +   FHR YS   L L S L +H  + +         F  +     
Sbjct: 20  FLEPPPAVISAVAASRVCFHRYYSSKSLSLVSPLGLHCSSLFSPPALCNSAFSSSATSTT 79

Query: 385 LNIFKSNFEVLVRNSEALGMR 323
           + +  +  EV++     +G R
Sbjct: 80  IEVQSTEHEVVIALGSNIGNR 100


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,722,539
Number of Sequences: 28952
Number of extensions: 264494
Number of successful extensions: 582
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 571
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 582
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1506636208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)