Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30823
         (716 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor su...    27   0.20 
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    23   2.5  
AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    21   7.6  

>AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor
           subunit protein.
          Length = 243

 Score = 26.6 bits (56), Expect = 0.20
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = -1

Query: 527 LSSESGLLPFFIYGKRWTSVVLSLQHTDYSR*SCHL 420
           +SSE  L  F + G R  +V +SL   +YSR +C +
Sbjct: 208 VSSEVSLPQFKVLGHRRRAVEISLTTGNYSRLACEI 243


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -3

Query: 468 CPKSTAHRLFQMILSSAVTIGQPAT*AEFV 379
           C K+T  +LF+M  SSA+      T A  V
Sbjct: 889 CDKATCEKLFRMKKSSALRPASGGTTARVV 918


>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -2

Query: 523 PVSRVFYPSLYTGKDGLVLS 464
           P+S V YPS++T    L+ S
Sbjct: 21  PLSSVSYPSMFTPSQLLMAS 40


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,943
Number of Sequences: 336
Number of extensions: 3938
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19051215
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)