Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30823
         (716 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_02_0132 + 8655333-8655461,8655864-8656016                           30   2.1  
04_03_0512 + 16675940-16677193,16677325-16677853,16678920-166789...    28   6.4  

>11_02_0132 + 8655333-8655461,8655864-8656016
          Length = 93

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = -2

Query: 424 ICCNHWTTGHLSRVRHYLVPRSSPTKNLPIKFHIP 320
           +C +  T GHLS +R   VPR+    NLP   ++P
Sbjct: 1   MCGHDPTNGHLSSLRKNEVPRTQSIDNLPKTANLP 35


>04_03_0512 +
           16675940-16677193,16677325-16677853,16678920-16678999,
           16679450-16679533
          Length = 648

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -2

Query: 421 CCNHWTTGHLSRVRHYLVPRSSPTKNL 341
           C N WT GH + +R  ++P S+PT +L
Sbjct: 9   CSNGWTDGH-APMRLLMLPPSTPTTSL 34


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,778,861
Number of Sequences: 37544
Number of extensions: 381838
Number of successful extensions: 674
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 665
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 674
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1862792824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)