Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30823
         (716 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g69890.1 68414.m08043 expressed protein  contains Pfam profil...    29   3.1  
At5g52380.1 68418.m06499 zinc knuckle (CCHC-type) family protein...    29   4.1  
At5g37150.1 68418.m04460 tRNA-splicing endonuclease positive eff...    27   9.4  

>At1g69890.1 68414.m08043 expressed protein  contains Pfam profile:
           PF04601 protein of unknown function (DUF569
          Length = 279

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 17/53 (32%), Positives = 24/53 (45%)
 Frame = -2

Query: 517 SRVFYPSLYTGKDGLVLS*VYSTQTIPDDLVICCNHWTTGHLSRVRHYLVPRS 359
           S V Y   + G     L+     +T  DD+V+C  H + G L  +R  L P S
Sbjct: 215 SAVGYALTFKGNSVEQLTQALQEETSMDDVVVCTRHPSNGKLFPLRLQLPPNS 267


>At5g52380.1 68418.m06499 zinc knuckle (CCHC-type) family protein
           contains Pfam domain, PF00098: Zinc knuckle
          Length = 268

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 16/51 (31%), Positives = 23/51 (45%)
 Frame = +2

Query: 506 KDPTHWTKNRSVFRH*SLLVHTGKLNRSTYSYREPTRHSGFKGGTAVVLCN 658
           KDP    K +S+F+       T +  R+  S R P R  G K G    +C+
Sbjct: 30  KDPNKKKKKKSLFKKKKPGSSTDRPQRTGSSTRHPLRVPGMKPGEGCFICH 80


>At5g37150.1 68418.m04460 tRNA-splicing endonuclease positive
           effector-related contains similarity to SEN1, a positive
           effector of tRNA-splicing endonuclease [Saccharomyces
           cerevisiae] gi|172574|gb|AAB63976
          Length = 839

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 19/65 (29%), Positives = 33/65 (50%)
 Frame = -2

Query: 202 QTIKNNQCS*RKSWGNINLMYFQVLNIKLSNKTGSVSTVTNGNPRNILLKDPA*LSYVYY 23
           +T +++  S  K + +I L   + L+ K   K G +  +T   PR I   +P  L+YV+ 
Sbjct: 79  KTKQSSGSSSNKLFYDITLKATESLSAKYQPKCGDLIALTMDKPRRINDLNPLLLAYVFS 138

Query: 22  *DRNL 8
            D +L
Sbjct: 139 SDGDL 143


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,588,026
Number of Sequences: 28952
Number of extensions: 325753
Number of successful extensions: 566
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 558
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 566
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1555552968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)