Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30821
(340 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0665 - 18506221-18506271,18506331-18506401,18507097-185071... 31 0.17
11_04_0460 - 17955102-17955146,17955253-17955310,17955442-179555... 29 0.70
03_06_0034 + 31197846-31198417,31198562-31198987,31199074-311993... 29 0.93
02_01_0129 - 934865-935152,935241-935490,935965-936105,937175-93... 29 1.2
12_02_1275 - 27482784-27483272 28 1.6
06_03_0685 - 23499779-23500204 28 1.6
04_03_0489 + 16503325-16503747,16503916-16503978 28 2.1
09_06_0293 + 22086359-22086496,22086604-22087213,22087407-220879... 27 2.8
03_05_0057 + 20350971-20351405 27 2.8
01_06_0997 + 33676441-33676758,33678223-33678314,33678443-336785... 27 2.8
01_01_1225 - 9894899-9895333 27 2.8
09_04_0361 - 16948740-16948860,16948951-16949018,16949424-169495... 27 3.8
09_02_0425 + 9167684-9167803,9168034-9168108,9168200-9168653,916... 27 3.8
05_03_0408 + 13601576-13601748,13601795-13602104,13602597-136028... 27 3.8
05_04_0347 + 20479682-20479753,20480136-20480813,20481143-204821... 27 5.0
04_03_0890 + 20576843-20578119,20578563-20578806,20578890-20580002 27 5.0
04_01_0314 - 4243928-4244361,4245178-4245415 27 5.0
03_04_0163 + 17865529-17865801,17866030-17866102,17866251-17866270 27 5.0
08_02_1499 - 27558872-27559015,27559544-27559666,27560214-275603... 26 6.6
06_03_0786 - 24579722-24580137,24580518-24580590 26 6.6
04_03_0771 + 19434460-19434987 26 6.6
01_06_0691 - 31268729-31269010,31269596-31270051,31270560-31271735 26 6.6
08_02_1345 - 26286448-26286679,26287483-26288038,26288068-262883... 26 8.7
08_02_0833 - 21623721-21623821,21624076-21624667 26 8.7
08_01_0133 + 1062365-1063057,1063210-1063318,1063914-1064005,106... 26 8.7
07_01_0538 + 3982952-3983297,3983397-3983489,3983627-3983733 26 8.7
05_03_0446 + 14111667-14111906,14112011-14112418 26 8.7
04_04_0407 - 24983491-24983575,24983655-24984015,24984367-249844... 26 8.7
>04_03_0665 -
18506221-18506271,18506331-18506401,18507097-18507169,
18507476-18507805
Length = 174
Score = 31.5 bits (68), Expect = 0.17
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = +2
Query: 149 WKWCGLRRDQTGREG 193
W WCGLRR + GR G
Sbjct: 65 WMWCGLRRSKAGRRG 79
>11_04_0460 -
17955102-17955146,17955253-17955310,17955442-17955593,
17955888-17955993,17956101-17956222,17956766-17956834,
17956969-17957214,17957331-17957373,17957449-17957520,
17957954-17958066,17958158-17958238,17958343-17958415,
17959413-17959519,17960410-17960514,17960684-17960974,
17961621-17961707,17961774-17961842,17961917-17961973,
17962057-17962155,17962223-17962312,17962395-17962511,
17964164-17964244,17964353-17964502,17964812-17964956,
17967359-17967510,17967647-17967784,17967838-17967914,
17968032-17968134
Length = 1015
Score = 29.5 bits (63), Expect = 0.70
Identities = 18/55 (32%), Positives = 27/55 (49%)
Frame = +3
Query: 123 SSSISKYYNGNGVDSVETKQVEKVYSGDGASLSAPGSKRSALSASDAECFSLCLG 287
SSS S+Y N +G +T +++ SG +S S +S+ D E L LG
Sbjct: 781 SSSSSRYSNSSGTIFQKTSVQKRLSSGSSSSSKNKRSTAVVMSSPDCELDLLLLG 835
>03_06_0034 +
31197846-31198417,31198562-31198987,31199074-31199386,
31199510-31199560
Length = 453
Score = 29.1 bits (62), Expect = 0.93
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = -1
Query: 244 AERLLPGALRDAPSPE*TFSTCLVSTESTPF 152
++RL+ ALR PSP F++ L +TPF
Sbjct: 39 SQRLVYAALRSLPSPRALFASLLSQLSATPF 69
>02_01_0129 -
934865-935152,935241-935490,935965-936105,937175-937707
Length = 403
Score = 28.7 bits (61), Expect = 1.2
Identities = 14/29 (48%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Frame = +1
Query: 235 NAQLC-RLRTPSVSRCAWAPGLCGGPDVP 318
NA C R P V+ +WAP CGG VP
Sbjct: 75 NAWNCPRNSRPPVAALSWAPARCGGGAVP 103
>12_02_1275 - 27482784-27483272
Length = 162
Score = 28.3 bits (60), Expect = 1.6
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = +2
Query: 146 QWKWCGLRRDQTGREG 193
+W W GLRR +TGR G
Sbjct: 144 RWVWRGLRRTKTGRRG 159
>06_03_0685 - 23499779-23500204
Length = 141
Score = 28.3 bits (60), Expect = 1.6
Identities = 16/42 (38%), Positives = 20/42 (47%)
Frame = +1
Query: 166 PSRPNRSRRFIPVTGRL*ALPAANAQLCRLRTPSVSRCAWAP 291
P R R RR+ P GR+ LP ++CR R P R P
Sbjct: 42 PPRGGRIRRWPPRRGRIRGLPPLGGRICR-RPPRGGRIHGLP 82
>04_03_0489 + 16503325-16503747,16503916-16503978
Length = 161
Score = 27.9 bits (59), Expect = 2.1
Identities = 16/36 (44%), Positives = 18/36 (50%)
Frame = +1
Query: 226 PAANAQLCRLRTPSVSRCAWAPGLCGGPDVPAHGSA 333
PAA A L RLRTP+ + C G P V H A
Sbjct: 49 PAAAACLRRLRTPATAACLRRAGNPRPPPVSPHKGA 84
>09_06_0293 +
22086359-22086496,22086604-22087213,22087407-22087938,
22088617-22089151
Length = 604
Score = 27.5 bits (58), Expect = 2.8
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = +2
Query: 146 QWKWCGLRRDQTGREG 193
+W W GLRR +TGR G
Sbjct: 558 RWVWRGLRRIKTGRRG 573
>03_05_0057 + 20350971-20351405
Length = 144
Score = 27.5 bits (58), Expect = 2.8
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = +3
Query: 216 LSAPGSKRSALSASDAECFSLCLGAGP 296
LS+P + R AL D EC S AGP
Sbjct: 74 LSSPKAAREALKVHDPECCSRSPSAGP 100
>01_06_0997 +
33676441-33676758,33678223-33678314,33678443-33678540,
33678824-33678979,33679106-33679731,33679826-33679896,
33679987-33680241,33680337-33680454,33680595-33680766,
33680854-33681395
Length = 815
Score = 27.5 bits (58), Expect = 2.8
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +2
Query: 146 QWKWCGLRRDQTGREG 193
+W+W GLRR + GR G
Sbjct: 64 RWEWHGLRRTKAGRRG 79
>01_01_1225 - 9894899-9895333
Length = 144
Score = 27.5 bits (58), Expect = 2.8
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = -1
Query: 334 VQSREQGHQDHHRGPAPRHSEKHSASEADRAERLLPGA 221
V + + H+ H R P+P + K S ++A A R LP A
Sbjct: 55 VVAAHRRHRRHRRSPSPPDA-KRSTADATVAPRFLPAA 91
>09_04_0361 -
16948740-16948860,16948951-16949018,16949424-16949510,
16949626-16949694,16949786-16949854,16949944-16950765
Length = 411
Score = 27.1 bits (57), Expect = 3.8
Identities = 11/32 (34%), Positives = 15/32 (46%)
Frame = -1
Query: 328 SREQGHQDHHRGPAPRHSEKHSASEADRAERL 233
S +GH +HHR + A E DR + L
Sbjct: 50 SSSRGHAEHHRNGGGGGEHRREAGEGDRPKAL 81
>09_02_0425 +
9167684-9167803,9168034-9168108,9168200-9168653,
9168735-9168784
Length = 232
Score = 27.1 bits (57), Expect = 3.8
Identities = 12/36 (33%), Positives = 16/36 (44%)
Frame = +1
Query: 226 PAANAQLCRLRTPSVSRCAWAPGLCGGPDVPAHGSA 333
P Q R P++ RC+W P L PA S+
Sbjct: 82 PTRRGQQQRRHAPALRRCSWEPLLALAAAAPARDSS 117
>05_03_0408 +
13601576-13601748,13601795-13602104,13602597-13602834,
13603014-13603364,13603457-13603542,13603685-13603759,
13604241-13604542,13605359-13605622,13606032-13606806
Length = 857
Score = 27.1 bits (57), Expect = 3.8
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = +1
Query: 160 WTPSRPNRSRRFIPVTG 210
+ P+RP R RRF+P+ G
Sbjct: 716 YPPNRPTRCRRFVPLPG 732
>05_04_0347 +
20479682-20479753,20480136-20480813,20481143-20482195,
20482345-20482406,20482491-20482541,20482635-20482719,
20483253-20483342,20483472-20483563,20483704-20483728
Length = 735
Score = 26.6 bits (56), Expect = 5.0
Identities = 16/43 (37%), Positives = 25/43 (58%)
Frame = +3
Query: 105 IQQLNCSSSISKYYNGNGVDSVETKQVEKVYSGDGASLSAPGS 233
+QQ N + ++ Y+G+G DS +T E V + D AS S G+
Sbjct: 89 LQQQNQQTELNLDYSGDGSDSSQTG--EDVPTADQASPSGSGT 129
>04_03_0890 + 20576843-20578119,20578563-20578806,20578890-20580002
Length = 877
Score = 26.6 bits (56), Expect = 5.0
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = -1
Query: 310 QDHHRGPAPRHSEKHSASEA 251
+DHHR PR + SASEA
Sbjct: 714 EDHHRSKRPRTTTTSSASEA 733
>04_01_0314 - 4243928-4244361,4245178-4245415
Length = 223
Score = 26.6 bits (56), Expect = 5.0
Identities = 20/74 (27%), Positives = 30/74 (40%)
Frame = +3
Query: 84 LSKMTMLIQQLNCSSSISKYYNGNGVDSVETKQVEKVYSGDGASLSAPGSKRSALSASDA 263
L K L + N S+ ++ +N +E ++ Y GDG + P S RSA + S
Sbjct: 156 LRKARALWRMSNASAGVTSKHN-----HMEEQERVAPYGGDGFQVRTPRSTRSAFT-SQL 209
Query: 264 ECFSLCLGAGPLWW 305
G WW
Sbjct: 210 LASPTAARLGRRWW 223
>03_04_0163 + 17865529-17865801,17866030-17866102,17866251-17866270
Length = 121
Score = 26.6 bits (56), Expect = 5.0
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +2
Query: 146 QWKWCGLRRDQTGREG 193
+W W GLRR + GR G
Sbjct: 49 RWMWRGLRRTKAGRRG 64
>08_02_1499 -
27558872-27559015,27559544-27559666,27560214-27560312,
27561257-27561307
Length = 138
Score = 26.2 bits (55), Expect = 6.6
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = -2
Query: 330 RAVSRDIRTTTEARRPGTARNTRRPKPTELSVCCRERSET 211
+AV + + T AR+ G A +P P +VCC + ET
Sbjct: 17 KAVKTNSISFTSARK-GNAFLRLQPVPMRFAVCCAAKKET 55
>06_03_0786 - 24579722-24580137,24580518-24580590
Length = 162
Score = 26.2 bits (55), Expect = 6.6
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +2
Query: 146 QWKWCGLRRDQTGREGL 196
+W W GLRR + GR G+
Sbjct: 144 RWMWRGLRRMKDGRRGM 160
>04_03_0771 + 19434460-19434987
Length = 175
Score = 26.2 bits (55), Expect = 6.6
Identities = 17/56 (30%), Positives = 24/56 (42%)
Frame = -1
Query: 337 AVQSREQGHQDHHRGPAPRHSEKHSASEADRAERLLPGALRDAPSPE*TFSTCLVS 170
A +RE+ HHRG A + +H+ + R LP P P ST V+
Sbjct: 76 ADSTREEAEHGHHRGRAGGEARRHTVV---LSRRSLPPESSPPPPPSPEPSTAAVA 128
>01_06_0691 - 31268729-31269010,31269596-31270051,31270560-31271735
Length = 637
Score = 26.2 bits (55), Expect = 6.6
Identities = 17/47 (36%), Positives = 22/47 (46%)
Frame = -2
Query: 294 ARRPGTARNTRRPKPTELSVCCRERSETPRHRNKPSRPVWSRRSPHH 154
AR P R+ P+ + + +R TP R KPS P RSP H
Sbjct: 242 ARSPPLRRDV--PELFKEAKSSSKRFSTPPPRRKPSSPPAPSRSPPH 286
>08_02_1345 -
26286448-26286679,26287483-26288038,26288068-26288358,
26288953-26290516
Length = 880
Score = 25.8 bits (54), Expect = 8.7
Identities = 18/72 (25%), Positives = 32/72 (44%)
Frame = +3
Query: 111 QLNCSSSISKYYNGNGVDSVETKQVEKVYSGDGASLSAPGSKRSALSASDAECFSLCLGA 290
QL + + K +GN + V ++ +S + + + R LS+ D EC L A
Sbjct: 579 QLESCNDVGK--DGNAILEVSSEHKIDTFSAEVTTEDKGKTCRYRLSSIDYECLELHFKA 636
Query: 291 GPLWWS*CPCSR 326
+ W+ CS+
Sbjct: 637 EMIEWTCENCSK 648
>08_02_0833 - 21623721-21623821,21624076-21624667
Length = 230
Score = 25.8 bits (54), Expect = 8.7
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = +2
Query: 149 WK-WCGLRRDQTGREGLFR*RGVSERSRQQTLSSVGFGRR 265
WK WC RR+ +R GV R R++ S V +GR+
Sbjct: 90 WKAWC--RRESRRWPSSWRGEGVRWRMRRERRSGVSWGRK 127
>08_01_0133 +
1062365-1063057,1063210-1063318,1063914-1064005,
1064399-1064560,1064718-1064834,1065029-1065127
Length = 423
Score = 25.8 bits (54), Expect = 8.7
Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 5/31 (16%)
Frame = -2
Query: 258 PKPTELSVCCRER-----SETPRHRNKPSRP 181
P T L+V C +R S+ PR+RN P P
Sbjct: 53 PPVTPLAVACDDRHALPDSDEPRNRNPPDHP 83
>07_01_0538 + 3982952-3983297,3983397-3983489,3983627-3983733
Length = 181
Score = 25.8 bits (54), Expect = 8.7
Identities = 9/31 (29%), Positives = 15/31 (48%)
Frame = +1
Query: 244 LCRLRTPSVSRCAWAPGLCGGPDVPAHGSAP 336
+C+++ P +S+C P PD P P
Sbjct: 103 VCKVQAPPISQCTAVPTPPPAPDTPTLADEP 133
>05_03_0446 + 14111667-14111906,14112011-14112418
Length = 215
Score = 25.8 bits (54), Expect = 8.7
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = +3
Query: 192 VYSGDGASLSAPGSKR 239
+Y GD AS +APG KR
Sbjct: 90 IYDGDAASPAAPGPKR 105
>04_04_0407 -
24983491-24983575,24983655-24984015,24984367-24984406,
24984466-24984468
Length = 162
Score = 25.8 bits (54), Expect = 8.7
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = -2
Query: 339 GRCRAVSRDIRTTTEARRPGTARNTRRPKPTELSVCCRER 220
G + ++ IRT+ RP T + +R PK +S R +
Sbjct: 37 GTAKKTTKKIRTSVTFHRPKTLKKSRDPKYPRVSTPGRNK 76
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,410,321
Number of Sequences: 37544
Number of extensions: 211915
Number of successful extensions: 802
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 784
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 801
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 470052804
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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