Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30821
(340 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g12450.1 68417.m01970 expressed protein 30 0.34
At1g27060.1 68414.m03299 regulator of chromosome condensation (R... 29 0.79
At3g61940.1 68416.m06956 zinc transporter, putative similar to z... 27 3.2
At2g07630.1 68415.m00881 hypothetical protein 27 3.2
At2g12100.1 68415.m01300 Ulp1 protease family protein contains P... 27 4.2
At2g03150.1 68415.m00268 ATP/GTP-binding protein family contains... 27 4.2
At1g45090.1 68414.m05169 Ulp1 protease family protein similar to... 27 4.2
At5g45350.1 68418.m05567 proline-rich family protein contains pr... 26 5.6
At4g09060.1 68417.m01493 expressed protein 26 5.6
At5g35750.1 68418.m04281 histidine kinase (AHK2) identical to hi... 26 7.4
At4g18160.1 68417.m02698 outward rectifying potassium channel, p... 26 7.4
At4g11610.1 68417.m01859 C2 domain-containing protein contains I... 26 7.4
At2g46610.2 68415.m05813 arginine/serine-rich splicing factor, p... 26 7.4
At2g46610.1 68415.m05814 arginine/serine-rich splicing factor, p... 26 7.4
At1g21580.1 68414.m02698 hydroxyproline-rich glycoprotein family... 26 7.4
At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC... 25 9.7
At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC... 25 9.7
At4g35480.1 68417.m05042 zinc finger (C3HC4-type RING finger) fa... 25 9.7
At4g21070.1 68417.m03047 BRCT domain-containing protein / zinc f... 25 9.7
At4g15545.1 68417.m02375 expressed protein 25 9.7
>At4g12450.1 68417.m01970 expressed protein
Length = 277
Score = 30.3 bits (65), Expect = 0.34
Identities = 17/57 (29%), Positives = 27/57 (47%)
Frame = -2
Query: 333 CRAVSRDIRTTTEARRPGTARNTRRPKPTELSVCCRERSETPRHRNKPSRPVWSRRS 163
CR RD+ T +PGT + +P P+ +C R E + + P+R S R+
Sbjct: 36 CRKNVRDVVNT----QPGTVKKNPKPDPSLRRLCSSRRPELDSNSHHPTRRSVSARA 88
>At1g27060.1 68414.m03299 regulator of chromosome condensation
(RCC1) family protein low similiarity to UVB-resistance
protein UVR8 [Arabidopsis thaliana] GI:5478530; contains
Pfam profile PF00415: Regulator of chromosome
condensation (RCC1)
Length = 386
Score = 29.1 bits (62), Expect = 0.79
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = +1
Query: 280 AWAPGLCGGPDVPAHGSAP 336
+W G CGGPDV A S P
Sbjct: 229 SWGRGFCGGPDVHAPQSLP 247
>At3g61940.1 68416.m06956 zinc transporter, putative similar to zinc
transporter ZAT [Arabidopsis thaliana]
gi|4206640|gb|AAD11757; similar to zinc transporter
ZnT-2 [Rattus norvegicus] gi|1256378|gb|AAB02775; member
of the cation diffusion facilitator (CDF) family, or
cation efflux (CE) family, PMID:11500563
Length = 334
Score = 27.1 bits (57), Expect = 3.2
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = -1
Query: 316 GHQDHHRGPAPRHSEKHSASEADRAERLL 230
GH DH G HS H S +RAE+LL
Sbjct: 157 GH-DHGHGHDHGHSHDHGHSYGERAEQLL 184
>At2g07630.1 68415.m00881 hypothetical protein
Length = 458
Score = 27.1 bits (57), Expect = 3.2
Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Frame = +3
Query: 108 QQLNCSSSISKYYNGNGVDSVETKQVEKVYSGDGASLSAPGSKRSA-LSASDAECFS 275
Q L C + +K Y + DS++ + YS + + + P SKRS+ S S A+ FS
Sbjct: 369 QYLVCVENENKRYQMH--DSIDQCSLMLTYSEEPSEATTPSSKRSSDTSISPADNFS 423
>At2g12100.1 68415.m01300 Ulp1 protease family protein contains Pfam
profile PF02902: Ulp1 protease family, C-terminal
catalytic domain; similar to At5g28270, At2g05450,
At1g45090, At2g16180, At2g06750
Length = 1224
Score = 26.6 bits (56), Expect = 4.2
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = -1
Query: 298 RGPAPRHSEKHSASEADRAERLLPGALRDAPSPE 197
R P+P H +H + E+LLP + P+ E
Sbjct: 681 RVPSPSHQPEHGIPDGGNFEQLLPDPILSDPALE 714
>At2g03150.1 68415.m00268 ATP/GTP-binding protein family contains
ATP/GTP-binding site motif A (P-loop), PROSITE:PS00017
Length = 1340
Score = 26.6 bits (56), Expect = 4.2
Identities = 15/53 (28%), Positives = 23/53 (43%)
Frame = -2
Query: 297 EARRPGTARNTRRPKPTELSVCCRERSETPRHRNKPSRPVWSRRSPHHFHCSI 139
E +R + R P S +ER+ P+ ++ +R RR HH SI
Sbjct: 418 ERKRALEIKRDRTPTARATSKDTKERTPVPKSISRDARSSSLRRDAHHREASI 470
>At1g45090.1 68414.m05169 Ulp1 protease family protein similar to
At5g28270, At2g12100, At2g05450, At2g16180, At2g06750;
contains Pfam profile PF02902: Ulp1 protease family,
C-terminal catalytic domain
Length = 1210
Score = 26.6 bits (56), Expect = 4.2
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = -1
Query: 298 RGPAPRHSEKHSASEADRAERLLPGALRDAPSPE 197
R P+P H +H + E+LLP + P+ E
Sbjct: 672 RVPSPSHQPEHGIPDGGNFEQLLPDPILSDPALE 705
>At5g45350.1 68418.m05567 proline-rich family protein contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 177
Score = 26.2 bits (55), Expect = 5.6
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = +1
Query: 286 APGLCGGPDVPAHGSAPP 339
APG G P P HG PP
Sbjct: 73 APGYGGYPPAPGHGGYPP 90
>At4g09060.1 68417.m01493 expressed protein
Length = 341
Score = 26.2 bits (55), Expect = 5.6
Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Frame = -2
Query: 291 RRPGTARNTRRPKPTELSVCCRERSE--TPRHRNKPSRPVWS 172
R +A++ +R P +S +R E +P KP PVW+
Sbjct: 290 RNSASAKSNKRKSPKTMSSPVEKRLEFSSPEISRKPLSPVWN 331
>At5g35750.1 68418.m04281 histidine kinase (AHK2) identical to
histidine kinase AHK2 [Arabidopsis thaliana]
gi|13537196|dbj|BAB40774
Length = 1176
Score = 25.8 bits (54), Expect = 7.4
Identities = 11/39 (28%), Positives = 21/39 (53%)
Frame = +3
Query: 114 LNCSSSISKYYNGNGVDSVETKQVEKVYSGDGASLSAPG 230
+ SS S+ Y G G+ +K++ ++ G+ +S PG
Sbjct: 816 MQADSSTSRTYGGTGIGLSISKRLVELMQGEMGFVSEPG 854
>At4g18160.1 68417.m02698 outward rectifying potassium channel,
putative (KCO6) similar to kco1 [Arabidopsis thaliana]
gi|2230761|emb|CAA69158; member of the 2 pore, 4
transmembrane (2P/4TM) K+ channel family, PMID:11500563
Length = 436
Score = 25.8 bits (54), Expect = 7.4
Identities = 12/30 (40%), Positives = 22/30 (73%), Gaps = 1/30 (3%)
Frame = +2
Query: 236 TLSSVGFGRRVFLAVPGRR-ASVVVLMSLL 322
++++VG+G R F +PGR A++ +L+S L
Sbjct: 310 SVTTVGYGDRAFKTLPGRLFAAIWLLVSTL 339
>At4g11610.1 68417.m01859 C2 domain-containing protein contains
INTERPRO:IPR000008 C2 domain
Length = 1011
Score = 25.8 bits (54), Expect = 7.4
Identities = 9/36 (25%), Positives = 17/36 (47%)
Frame = -1
Query: 337 AVQSREQGHQDHHRGPAPRHSEKHSASEADRAERLL 230
++ + + H +HH P+H SE R +L+
Sbjct: 193 SLAAEQDNHNEHHHHYVPKHQVDEMRSEPARPSKLV 228
>At2g46610.2 68415.m05813 arginine/serine-rich splicing factor,
putative similar to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 224
Score = 25.8 bits (54), Expect = 7.4
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -2
Query: 228 RERSETPRHRNKPSRPVWSRRSPHH 154
R RS +P +R +PS RRSP +
Sbjct: 154 RRRSPSPVYRRRPSPDYTRRRSPEY 178
>At2g46610.1 68415.m05814 arginine/serine-rich splicing factor,
putative similar to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 250
Score = 25.8 bits (54), Expect = 7.4
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -2
Query: 228 RERSETPRHRNKPSRPVWSRRSPHH 154
R RS +P +R +PS RRSP +
Sbjct: 180 RRRSPSPVYRRRPSPDYTRRRSPEY 204
>At1g21580.1 68414.m02698 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 1696
Score = 25.8 bits (54), Expect = 7.4
Identities = 14/46 (30%), Positives = 17/46 (36%)
Frame = -2
Query: 291 RRPGTARNTRRPKPTELSVCCRERSETPRHRNKPSRPVWSRRSPHH 154
RR + R P+ R ETPR WSR+ HH
Sbjct: 300 RREASNELNRTPRKQVQKKSALLRLETPRSYKNSRENEWSRQHNHH 345
>At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 25.4 bits (53), Expect = 9.7
Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
Frame = -2
Query: 330 RAVSRDIRTTTEARRPGTARNTRRPKPTELSVCCR--ERSETPRHRNKPSRPVWSRRSP 160
R+ SR + + R P ++ + E+S R ERS +PR P P + SP
Sbjct: 206 RSHSRSLSASPARRSPRSSSPQKTSPAREVSPDKRSNERSPSPRRSLSPRSPALQKASP 264
>At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 25.4 bits (53), Expect = 9.7
Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
Frame = -2
Query: 330 RAVSRDIRTTTEARRPGTARNTRRPKPTELSVCCR--ERSETPRHRNKPSRPVWSRRSP 160
R+ SR + + R P ++ + E+S R ERS +PR P P + SP
Sbjct: 206 RSHSRSLSASPARRSPRSSSPQKTSPAREVSPDKRSNERSPSPRRSLSPRSPALQKASP 264
>At4g35480.1 68417.m05042 zinc finger (C3HC4-type RING finger)
family protein contains Pfam domain PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 200
Score = 25.4 bits (53), Expect = 9.7
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = +1
Query: 238 AQLCRLRTPSVSRCAWAPGLCGGPDVPAHGSAPP 339
A +C +V+RCAW L G + A G APP
Sbjct: 36 ALVCVAGLAAVARCAWLRRLT-GVNPAAVGEAPP 68
>At4g21070.1 68417.m03047 BRCT domain-containing protein / zinc
finger (C3HC4-type RING finger) family protein (BRCA1)
contains Pfam profiles PF00533: BRCA1 C Terminus (BRCT)
domain, PF00097: Zinc finger, C3HC4 type (RING finger),
PF01535: PPR repeat; identical to cDNA BRCA1 GI:28372473
Length = 1276
Score = 25.4 bits (53), Expect = 9.7
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = -1
Query: 319 QGHQDHHRGPAPRHSEKHSASE 254
+G QD GP+ H EK S +E
Sbjct: 764 KGDQDQAHGPSDTHPEKRSPTE 785
>At4g15545.1 68417.m02375 expressed protein
Length = 337
Score = 25.4 bits (53), Expect = 9.7
Identities = 15/43 (34%), Positives = 19/43 (44%)
Frame = -1
Query: 283 RHSEKHSASEADRAERLLPGALRDAPSPE*TFSTCLVSTESTP 155
RHS S ++ E DAP P + S LVS +TP
Sbjct: 168 RHSSIQSQQASEAIEPAATDNENDAPKPSLSASLPLVSQTTTP 210
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,764,648
Number of Sequences: 28952
Number of extensions: 147015
Number of successful extensions: 545
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 538
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 545
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 399440640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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