Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30819
         (477 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_02_0033 + 12075384-12075869                                         28   4.5  
05_04_0116 + 18131510-18133192                                         28   4.5  
02_04_0287 + 21600047-21600478                                         28   4.5  
10_08_0505 + 18384392-18384454,18384593-18384679,18385878-183864...    27   7.8  

>07_02_0033 + 12075384-12075869
          Length = 161

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 16/26 (61%), Positives = 17/26 (65%), Gaps = 2/26 (7%)
 Frame = +1

Query: 238 TPSVGRVSGSWRHLRCRFPWA--PVT 309
           T +VG VSGSW  LR RF  A  PVT
Sbjct: 94  TSTVGCVSGSWEKLRDRFCLAFFPVT 119


>05_04_0116 + 18131510-18133192
          Length = 560

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 20/77 (25%), Positives = 33/77 (42%), Gaps = 2/77 (2%)
 Frame = -2

Query: 296 HGNLQRKCRQLPDTRPTDGVVIQKSTGQLTLRYSVAHHKL--VYEKYMSETVISLLAKRN 123
           HG+L+R    L  +RP D      S  ++      A  ++   + + M+  VI      +
Sbjct: 155 HGHLRRCAEALAASRPADADAELASIARMASSDGDAVQRVAAAFAEAMARVVIRPWRGVS 214

Query: 122 SARFPRDGSVVGTRLTS 72
           +A FP D    G  LT+
Sbjct: 215 AALFPSDAGAAGDALTA 231


>02_04_0287 + 21600047-21600478
          Length = 143

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +2

Query: 38  HAPPSAKLCRSTRLAEFRRRCHLSGIVLN 124
           HAP SA+ CR  R A  RR  H   + +N
Sbjct: 73  HAPASARRCRRCRRALERREPHWPDLAVN 101


>10_08_0505 +
           18384392-18384454,18384593-18384679,18385878-18386409,
           18387042-18387564,18387734-18387791
          Length = 420

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +2

Query: 20  GKCDGVHAPPSAKLCRSTRLAEFRRRCH 103
           G+ DG  A   +K+C    + EF RR H
Sbjct: 265 GEFDGAKAYKDSKVCNMLTMQEFHRRYH 292


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,023,042
Number of Sequences: 37544
Number of extensions: 269771
Number of successful extensions: 537
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 529
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 537
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 979080328
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)