Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30818
         (627 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein pr...    25   0.69 
AM292330-1|CAL23142.2|  408|Tribolium castaneum gustatory recept...    22   3.7  
AM292323-1|CAL23135.2|  587|Tribolium castaneum gustatory recept...    21   8.4  
AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less prot...    21   8.4  

>AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein
           protein.
          Length = 392

 Score = 24.6 bits (51), Expect = 0.69
 Identities = 17/45 (37%), Positives = 23/45 (51%)
 Frame = -2

Query: 530 PKPMIPTVLSRRSCPRTLSKPISHSPLRT*SRFSVNLLEADSRSP 396
           P    P + S +S P + S     SP R   R S+NLLE D++ P
Sbjct: 213 PPQETPVLASYKSVPMSFS-----SPRR---RHSINLLEEDNQKP 249


>AM292330-1|CAL23142.2|  408|Tribolium castaneum gustatory receptor
           candidate 9 protein.
          Length = 408

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -3

Query: 175 LCLACFLLDQSLN 137
           LC  CFLLD+ L+
Sbjct: 274 LCHLCFLLDEKLS 286



 Score = 21.0 bits (42), Expect = 8.4
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = -1

Query: 615 FGFFPVSRVNKP 580
           FGFFPV  V  P
Sbjct: 30  FGFFPVQGVRGP 41


>AM292323-1|CAL23135.2|  587|Tribolium castaneum gustatory receptor
           candidate 2 protein.
          Length = 587

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = -1

Query: 615 FGFFPVSRVNKP 580
           FGFFPV  V  P
Sbjct: 30  FGFFPVQGVRGP 41


>AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less
           protein.
          Length = 312

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +3

Query: 447 TQGRMGDRFRQGPRARPPRQHRRDHRL 527
           T  R+       PRARP  +  RD+RL
Sbjct: 230 TSDRVHAALVTSPRARPLARTCRDNRL 256


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 142,225
Number of Sequences: 336
Number of extensions: 3063
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 16083914
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)