Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30818
(627 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPACUNK4.10 |||hydroxyacid dehydrogenase |Schizosaccharomyces po... 77 2e-15
SPCC364.07 ||SPCC4G3.01|D-3 phosphoglycerate dehydrogenase |Schi... 61 1e-10
SPAC186.07c |||hydroxyacid dehydrogenase |Schizosaccharomyces po... 58 8e-10
SPAC186.02c |||hydroxyacid dehydrogenase |Schizosaccharomyces po... 55 7e-09
SPBC1773.17c ||SPBP26C9.01c|hydroxyacid dehydrogenase |Schizosac... 54 2e-08
SPAC13A11.03 |mcp7|mug32|meiosis specific coiled-coil protein Mc... 33 0.026
SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom... 27 2.9
SPCC737.06c |||glutamate-cysteine ligase regulatory subunit |Sch... 27 2.9
SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ... 26 3.9
SPAC1A6.10 ||SPAC30D11.15c|Moeb/ThiF domain|Schizosaccharomyces ... 26 3.9
SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1 |Sc... 26 5.1
SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|ch... 25 6.8
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p... 25 6.8
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 25 6.8
SPCC162.03 |||short chain dehydrogenase |Schizosaccharomyces pom... 25 9.0
>SPACUNK4.10 |||hydroxyacid dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 334
Score = 77.4 bits (182), Expect = 2e-15
Identities = 40/127 (31%), Positives = 65/127 (51%)
Frame = +1
Query: 244 EILDAAGTQLKIVSTVSAGYNHCNPEELRARGIQLTNTPNVLSPAVAEVAVGLLLSASRR 423
EI+D +K + + AGY + ARGIQ+++ P + A A+V + L+L A R
Sbjct: 72 EIIDNLPPSVKFICHLGAGYETVDVAACTARGIQVSHVPKAVDDATADVGIFLMLGALRG 131
Query: 424 FTENLDQVRRGEWEIGFDKVLGQDLRDSTVGIIGLGGIGQAVVKRLSGFDVARFIYSGHR 603
F + + ++ + W D T+GI+GLGGIG+ + KR FD+ + +Y
Sbjct: 132 FNQGIFELHKNNWNANCKP--SHDPEGKTLGILGLGGIGKTMAKRARAFDM-KIVYHNRT 188
Query: 604 EKPEAKA 624
PE +A
Sbjct: 189 PLPEEEA 195
>SPCC364.07 ||SPCC4G3.01|D-3 phosphoglycerate dehydrogenase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 466
Score = 60.9 bits (141), Expect = 1e-10
Identities = 38/129 (29%), Positives = 71/129 (55%), Gaps = 2/129 (1%)
Frame = +1
Query: 160 STLGREEILKLIPGCSALVWISNLPITNEILDAAGTQLKIVSTVSAGYNHCNPEELRARG 339
+++ +++++ I G A+ S +T +L+AA + L ++ G N + + RG
Sbjct: 84 TSMSEDDLVEKIKGVHAIGIRSKTRLTRRVLEAADS-LIVIGCFCIGTNQVDLDFAAERG 142
Query: 340 IQLTNTPNVLSPAVAEVAVGLLLSASRRFTENLDQVRRGEWEIGFDKVLG--QDLRDSTV 513
I + N+P S +VAE+ +G ++S +R+ + ++ RGEW +KV ++R T+
Sbjct: 143 IAVFNSPYANSRSVAELVIGYIISLARQVGDRSLELHRGEW----NKVSSGCWEIRGKTL 198
Query: 514 GIIGLGGIG 540
GIIG G IG
Sbjct: 199 GIIGYGHIG 207
>SPAC186.07c |||hydroxyacid dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 332
Score = 58.4 bits (135), Expect = 8e-10
Identities = 38/112 (33%), Positives = 60/112 (53%), Gaps = 1/112 (0%)
Frame = +1
Query: 238 TNEILDAAGTQLKIVSTVSAGYNHCNPEELRARGIQLTNTPNVLSPAVAEVAVGLLLSAS 417
T ++L GT K+++ AG+N+ + + GI + P AVAE +GLLLS +
Sbjct: 60 TLKVLAKNGT--KLIALRCAGFNNVDLKAAADNGITVVRVPAYSPYAVAEYTIGLLLSLN 117
Query: 418 RRFTENLDQVRRGEWEIGFDKVLGQDLRDSTVGIIGLGGIGQAVVKRLS-GF 570
R+ +VR ++ + + +LG DL T+G++G G IG V K L GF
Sbjct: 118 RKIHRAYVRVREDDFNL--NGLLGHDLHGKTIGLLGTGRIGGLVAKCLKLGF 167
>SPAC186.02c |||hydroxyacid dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 332
Score = 55.2 bits (127), Expect = 7e-09
Identities = 34/95 (35%), Positives = 51/95 (53%)
Frame = +1
Query: 271 LKIVSTVSAGYNHCNPEELRARGIQLTNTPNVLSPAVAEVAVGLLLSASRRFTENLDQVR 450
+K+V+ GYN+ N + I + + P+ AV+E VGLLLS +R+ +VR
Sbjct: 69 VKLVALRCGGYNNVNLKAASEYKITVVHVPSYSPFAVSEFTVGLLLSLNRKIHRAYVRVR 128
Query: 451 RGEWEIGFDKVLGQDLRDSTVGIIGLGGIGQAVVK 555
++ I +LG D+ TVG+IG G IG V K
Sbjct: 129 EDDFNI--VGLLGCDIHGKTVGVIGTGKIGSNVAK 161
>SPBC1773.17c ||SPBP26C9.01c|hydroxyacid dehydrogenase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 340
Score = 53.6 bits (123), Expect = 2e-08
Identities = 32/110 (29%), Positives = 52/110 (47%)
Frame = +1
Query: 232 PITNEILDAAGTQLKIVSTVSAGYNHCNPEELRARGIQLTNTPNVLSPAVAEVAVGLLLS 411
P T E+L K+ T +AGYN+ + + G+ + NTPN + A + + L +
Sbjct: 71 PFTEEMLGPLLPTCKLFVTGAAGYNNVDVDWATRNGVYVANTPNGPTEGTANMNLMLFMC 130
Query: 412 ASRRFTENLDQVRRGEWEIGFDKVLGQDLRDSTVGIIGLGGIGQAVVKRL 561
R E +R G+W L D VGIIG+G IG++ +++
Sbjct: 131 TLRGAREAEQSLRLGKWRQNLS--LTDDPYGKRVGIIGMGAIGKSFAQKI 178
>SPAC13A11.03 |mcp7|mug32|meiosis specific coiled-coil protein
Mcp7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 210
Score = 33.5 bits (73), Expect = 0.026
Identities = 26/99 (26%), Positives = 43/99 (43%), Gaps = 2/99 (2%)
Frame = +1
Query: 31 DDTMTKNLKVLVSSN--DYPPTALKILEDHFTVLQSRYLNFGQEGSTLGREEILKLIPGC 204
DD + K K+ S+ +P A + E LQ++ + Q+ TL +
Sbjct: 54 DDNIVKTEKIGTSNYYWSFPSDAKRSRESVLGSLQAQLDDLKQKSKTLDENISFEKSKRD 113
Query: 205 SALVWISNLPITNEILDAAGTQLKIVSTVSAGYNHCNPE 321
+ T E+L A ++LK++ T + NHCNPE
Sbjct: 114 NEGTENDANQYTLELLHAKESELKLLKTQLSNLNHCNPE 152
>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 963
Score = 26.6 bits (56), Expect = 2.9
Identities = 12/44 (27%), Positives = 23/44 (52%)
Frame = -2
Query: 506 LSRRSCPRTLSKPISHSPLRT*SRFSVNLLEADSRSPTATSATA 375
+ ++ P+T SKP SH+P+ + S+ P+A+ T+
Sbjct: 126 VKKKPIPKTKSKPTSHAPVSDNVSSTFRNATRKSKKPSASKDTS 169
>SPCC737.06c |||glutamate-cysteine ligase regulatory subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 287
Score = 26.6 bits (56), Expect = 2.9
Identities = 15/55 (27%), Positives = 27/55 (49%)
Frame = +1
Query: 31 DDTMTKNLKVLVSSNDYPPTALKILEDHFTVLQSRYLNFGQEGSTLGREEILKLI 195
D+ + KN+KVLV N+ P L ++ + ++ + G+ REE L +
Sbjct: 53 DENLKKNIKVLVPVNE-KPQKLDGKQEEYEIIVKLFFLDGENIDIKKREETLSQV 106
>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1502
Score = 26.2 bits (55), Expect = 3.9
Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
Frame = +1
Query: 34 DTMTKNLKVLV---SSNDYPPTALKILEDHFTVLQSRYLNFGQEGSTLGREEILKLIPGC 204
D + + L+V V SSND P T L + + F+ LQ +G E G + LI C
Sbjct: 916 DYLLRELEVSVASLSSNDQPSTGLYPILNMFSRLQYAQ-PYGNENEWTGLSQFEPLIFKC 974
Query: 205 SA 210
+A
Sbjct: 975 TA 976
>SPAC1A6.10 ||SPAC30D11.15c|Moeb/ThiF domain|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 485
Score = 26.2 bits (55), Expect = 3.9
Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Frame = +1
Query: 424 FTENL--DQVRRGEWEIGFDKVLGQDLRDSTVGIIGLGGIGQAVVKRLS 564
+ ENL +Q+ R G D + + LR+S V ++G GG+G V+ L+
Sbjct: 100 YDENLIREQLARNYAFFGEDGM--ERLRNSFVIVVGCGGVGSWVINMLA 146
>SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1573
Score = 25.8 bits (54), Expect = 5.1
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = +1
Query: 451 RGEWEIGFDKVLGQDLRDSTVGIIGLGGIGQAVVKRLSGFDVAR 582
RG ++ + + G LRD+ +IG GG +A + L V+R
Sbjct: 1397 RGIYDTFANALDGVSLRDTNGLVIGAGGTSRAAIYSLHRLGVSR 1440
>SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|chr
3|||Manual
Length = 867
Score = 25.4 bits (53), Expect = 6.8
Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Frame = -2
Query: 584 NLATSKP-LRRLTTACPIPPKPMIPTVLSRRSCPRTLSKPISHSPLRT*SRFSVNLLEAD 408
N + S P + L++ P PPKP P L R P T++ +S + L + + F ++
Sbjct: 296 NPSNSNPAVMSLSSNFPSPPKPNNPVYLPPRGNP-TVNDRVS-NVLPSITSFDSSVTTVP 353
Query: 407 SRSPTATSA 381
S SP ++
Sbjct: 354 SNSPATLNS 362
>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1323
Score = 25.4 bits (53), Expect = 6.8
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +1
Query: 412 ASRRFTENLDQVRRGEWEIGFDKVLGQDLRD 504
A RF + DQV+ W + V +DLRD
Sbjct: 496 AVHRFAGHTDQVKEFLWRCRGEDVFDRDLRD 526
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 25.4 bits (53), Expect = 6.8
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = +1
Query: 274 KIVSTVSAG-YNHCNPEELRARGIQLTNTPNVLS 372
KI+S + G N +L ARGI + NT NV++
Sbjct: 478 KIISRFATGDLNLLVCSDLMARGIDVANTQNVIN 511
>SPCC162.03 |||short chain dehydrogenase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 292
Score = 25.0 bits (52), Expect = 9.0
Identities = 11/46 (23%), Positives = 21/46 (45%)
Frame = +1
Query: 19 CLATDDTMTKNLKVLVSSNDYPPTALKILEDHFTVLQSRYLNFGQE 156
C TD L ++ D PP L + D +++ ++ + G+E
Sbjct: 216 CEETDPNKAAELLYSIAKLDRPPQKLVLGHDSLELIRKQHQDIGEE 261
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,529,147
Number of Sequences: 5004
Number of extensions: 49809
Number of successful extensions: 178
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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