Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30818
(627 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_12714| Best HMM Match : 2-Hacid_dh (HMM E-Value=2.6e-12) 77 9e-15
SB_36986| Best HMM Match : No HMM Matches (HMM E-Value=.) 74 1e-13
SB_36985| Best HMM Match : No HMM Matches (HMM E-Value=.) 73 3e-13
SB_31490| Best HMM Match : Aa_trans (HMM E-Value=4.9e-31) 30 1.8
SB_53067| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8
SB_54269| Best HMM Match : M (HMM E-Value=8.1e-20) 29 2.3
SB_6251| Best HMM Match : NMU (HMM E-Value=5.7) 29 2.3
SB_12659| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_57784| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.1
SB_46092| Best HMM Match : Peptidase_C35 (HMM E-Value=0.91) 28 7.1
SB_39072| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_24442| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
>SB_12714| Best HMM Match : 2-Hacid_dh (HMM E-Value=2.6e-12)
Length = 189
Score = 77.4 bits (182), Expect = 9e-15
Identities = 42/126 (33%), Positives = 72/126 (57%), Gaps = 1/126 (0%)
Frame = +1
Query: 235 ITNEILDAAGTQLKIVSTVSAGYNHCNPEELRARGIQLTNTPNVLSPAVAEVAVGLLLSA 414
++N +LD + LK++S++ AG++ + RGI++ NTP V+ A++A+GLLL++
Sbjct: 58 VSNSLLDDLPS-LKVISSIGAGFDRIDIPAATKRGIRVGNTPGVVQDCTADMAIGLLLAS 116
Query: 415 SRRF-TENLDQVRRGEWEIGFDKVLGQDLRDSTVGIIGLGGIGQAVVKRLSGFDVARFIY 591
+R T + + + G + G + ST+GI+GLG +G AV R GF + R +Y
Sbjct: 117 ARHIVTGDANTRKPGFTKESIFNCFGTRVTGSTLGIVGLGAVGSAVAMRAKGFKM-RILY 175
Query: 592 SGHREK 609
G K
Sbjct: 176 HGRTRK 181
>SB_36986| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 628
Score = 73.7 bits (173), Expect = 1e-13
Identities = 41/121 (33%), Positives = 68/121 (56%), Gaps = 1/121 (0%)
Frame = +1
Query: 268 QLKIVSTVSAGYNHCNPEELRARGIQLTNTPNVLSPAVAEVAVGLLLSASRRFTENLDQV 447
+L+++S+ G +H + RGI++ NTP V+ A+ A+GLLL+++R+ +
Sbjct: 69 ELRVISSAGVGVDHIDLAAATIRGIRVGNTPGVVQECTADHAIGLLLASARKICSGDSVI 128
Query: 448 RR-GEWEIGFDKVLGQDLRDSTVGIIGLGGIGQAVVKRLSGFDVARFIYSGHREKPEAKA 624
R+ G + G + ST+GI+GLGG+G AV R GF + R +Y +R + E K
Sbjct: 129 RQPGFSKESIFNSFGTKVTGSTLGIVGLGGVGSAVANRAKGFKM-RILYH-NRTRKEDKE 186
Query: 625 L 627
L
Sbjct: 187 L 187
>SB_36985| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 323
Score = 72.5 bits (170), Expect = 3e-13
Identities = 46/144 (31%), Positives = 79/144 (54%), Gaps = 1/144 (0%)
Frame = +1
Query: 196 PGCSALVWISNLPITNEILDAAGTQLKIVSTVSAGYNHCNPEELRARGIQLTNTPNVLSP 375
P ++ ++ + E L A+ LK++S + AG ++ + E + RGI + NTP + S
Sbjct: 48 PSVKGILHPASFGLITEELMASLPNLKVISNIGAGIDNIDLEAAKRRGILVGNTPGI-SD 106
Query: 376 AVAEVAVGLLLSASRRFTENLDQVRRGEWEI-GFDKVLGQDLRDSTVGIIGLGGIGQAVV 552
+A+ A LL++A+R + +R+ ++I G + +T+GIIGLG IG AV
Sbjct: 107 CLADFAWALLMAAARNVIQADAMMRKPGFKIPSIINWHGTRVSGATLGIIGLGNIGLAVA 166
Query: 553 KRLSGFDVARFIYSGHREKPEAKA 624
KR GFD+ R +Y K +A++
Sbjct: 167 KRAKGFDM-RILYYNRTRKMKAES 189
>SB_31490| Best HMM Match : Aa_trans (HMM E-Value=4.9e-31)
Length = 974
Score = 29.9 bits (64), Expect = 1.8
Identities = 22/80 (27%), Positives = 43/80 (53%), Gaps = 5/80 (6%)
Frame = +1
Query: 385 EVAVGLLLSASRRFTENL-----DQVRRGEWEIGFDKVLGQDLRDSTVGIIGLGGIGQAV 549
+VAV ++L +S ++ + +++++ + + LG D+ T+G GL + A+
Sbjct: 439 KVAVTMILDSSHQYRQLKADHCHEEMQKIRMAVEMEMTLG-DIGKITIGDWGLRIVNVAL 497
Query: 550 VKRLSGFDVARFIYSGHREK 609
V +GF VA FI+ G+ K
Sbjct: 498 VLTQTGFCVAYFIFMGNTIK 517
>SB_53067| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 668
Score = 29.9 bits (64), Expect = 1.8
Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Frame = +1
Query: 49 NLKVLVSSNDYPPTALKILEDHFTVLQSRYLNFGQEGSTLGREE--ILKLIPG--CSALV 216
N+ L+ N YP + + +L + + +G+EG G ++ ++ L G CSA
Sbjct: 297 NVTQLIQYNGYPVEDYDVTTEDGYILSVQRIPYGREGKCKGVKDKPVVFLQHGLLCSATN 356
Query: 217 WISNL 231
W++NL
Sbjct: 357 WVTNL 361
>SB_54269| Best HMM Match : M (HMM E-Value=8.1e-20)
Length = 3489
Score = 29.5 bits (63), Expect = 2.3
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = +1
Query: 34 DTMTKNLKVLVSSNDYPPTALKILEDHFTVLQSRYLNFGQEGSTL 168
D ++++LKV + + K E+H+ L +RY QEG L
Sbjct: 1431 DKLSEDLKVKIEEVEIAQREAKRTEEHYNELVTRYERENQEGQNL 1475
>SB_6251| Best HMM Match : NMU (HMM E-Value=5.7)
Length = 186
Score = 29.5 bits (63), Expect = 2.3
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = -2
Query: 569 KPLRRLTTACPIPPKPMIPTVLSRRSCPRTLSKPIS 462
+P++ AC +PPKP T R+ + KPI+
Sbjct: 92 RPMKAFHFACCVPPKPWSATCRPSRNEAKAFDKPIT 127
>SB_12659| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 384
Score = 29.1 bits (62), Expect = 3.1
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = +1
Query: 463 EIGFDKVLGQDLRDSTVGIIGLGGIGQAVVKRLS 564
E+G +V+G + +GLG +G++ +KRLS
Sbjct: 12 ELGLTEVVGMSFKKGLFVELGLGEVGKSFMKRLS 45
>SB_57784| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 593
Score = 27.9 bits (59), Expect = 7.1
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = -2
Query: 395 TATSATAGDRTFGVFVSCIP 336
TATSAT G+ TF +F C P
Sbjct: 476 TATSATGGEYTFPLFGHCSP 495
>SB_46092| Best HMM Match : Peptidase_C35 (HMM E-Value=0.91)
Length = 226
Score = 27.9 bits (59), Expect = 7.1
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -1
Query: 456 SPAYLIQILGEPSRGRQ*ESHGNLCN 379
+P Q L +P RGRQ + HGN+ N
Sbjct: 21 APRIAFQKLMQPPRGRQLKIHGNIVN 46
>SB_39072| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1011
Score = 27.5 bits (58), Expect = 9.4
Identities = 21/64 (32%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
Frame = -2
Query: 572 SKPLRRLTTACPIPPK-PMIPTVLSRRSCPRTLSKPISHSPLRT*SRFSVNLLEADSRSP 396
S P T + P P P P+ S S P TLS PI+ S T S S + + +P
Sbjct: 205 STPSTPSTLSMPSTPSMPNTPSTPSTPSTPSTLSTPITPSTPSTPSTPSTPSMPSTPSTP 264
Query: 395 TATS 384
+ S
Sbjct: 265 STPS 268
Score = 27.5 bits (58), Expect = 9.4
Identities = 21/64 (32%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
Frame = -2
Query: 572 SKPLRRLTTACPIPPK-PMIPTVLSRRSCPRTLSKPISHSPLRT*SRFSVNLLEADSRSP 396
S P T + P P P P+ S S P TLS PI+ S T S S + + +P
Sbjct: 755 STPSTPSTLSMPSTPSMPNTPSTPSTPSTPSTLSTPITPSTPSTPSTPSTPSMPSTPSTP 814
Query: 395 TATS 384
+ S
Sbjct: 815 STPS 818
>SB_24442| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 673
Score = 27.5 bits (58), Expect = 9.4
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +3
Query: 420 KVHRESGSSTQGRMGDRFRQGPRARPPRQHRR 515
+ HRE G+ TQG + + G AR PR RR
Sbjct: 302 RAHRERGARTQG-VAEIGHTGSAAREPRASRR 332
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,572,830
Number of Sequences: 59808
Number of extensions: 399118
Number of successful extensions: 1138
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1059
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1132
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1560464625
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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