Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30818
(627 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g45630.2 68415.m05674 oxidoreductase family protein low simil... 83 2e-16
At1g12550.1 68414.m01455 oxidoreductase family protein similar t... 81 4e-16
At1g79870.1 68414.m09330 oxidoreductase family protein contains ... 77 7e-15
At1g17745.1 68414.m02196 D-3-phosphoglycerate dehydrogenase / 3-... 70 1e-12
At1g68010.1 68414.m07769 glycerate dehydrogenase / NADH-dependen... 63 1e-10
At3g19480.1 68416.m02469 D-3-phosphoglycerate dehydrogenase, put... 60 9e-10
At4g34200.1 68417.m04854 D-3-phosphoglycerate dehydrogenase, put... 60 2e-09
At2g45630.1 68415.m05673 oxidoreductase family protein low simil... 56 2e-08
At5g14780.1 68418.m01734 formate dehydrogenase (FDH) identical t... 56 3e-08
At5g28310.1 68418.m03437 oxidoreductase-related low similarity t... 34 0.089
At4g15545.1 68417.m02375 expressed protein 30 1.1
At5g66120.2 68418.m08330 3-dehydroquinate synthase, putative sim... 29 1.9
At1g72190.1 68414.m08347 oxidoreductase family protein similar t... 29 1.9
At4g39780.1 68417.m05633 AP2 domain-containing transcription fac... 29 3.3
At1g72680.1 68414.m08405 cinnamyl-alcohol dehydrogenase, putativ... 29 3.3
At4g32420.1 68417.m04615 peptidyl-prolyl cis-trans isomerase cyc... 28 4.4
At4g15215.1 68417.m02332 ABC transporter family protein similar ... 28 4.4
At5g13730.1 68418.m01598 RNA polymerase sigma subunit SigD (sigD... 28 5.8
At4g32375.1 68417.m04610 glycoside hydrolase family 28 protein /... 28 5.8
At1g18540.1 68414.m02313 60S ribosomal protein L6 (RPL6A) simila... 28 5.8
At4g37980.1 68417.m05367 mannitol dehydrogenase, putative (ELI3-... 27 7.7
At4g36810.1 68417.m05221 geranylgeranyl pyrophosphate synthase (... 27 7.7
At4g15230.1 68417.m02333 ABC transporter family protein similar ... 27 7.7
At1g63940.3 68414.m07239 monodehydroascorbate reductase, putativ... 27 7.7
At1g05350.1 68414.m00542 thiF family protein low similarity to S... 27 7.7
>At2g45630.2 68415.m05674 oxidoreductase family protein low
similarity to SP|P36234 Glycerate dehydrogenase (EC
1.1.1.29) (NADH-dependent hydroxypyruvate reductase)
{Hyphomicrobium methylovorum}; contains Pfam profile
PF00389: D-isomer specific 2-hydroxyacid dehydrogenase,
catalytic domain
Length = 338
Score = 82.6 bits (195), Expect = 2e-16
Identities = 63/201 (31%), Positives = 94/201 (46%), Gaps = 1/201 (0%)
Frame = +1
Query: 13 IPCLATDDTMTKNLKVLVSSNDYPPTALKILEDHFTVLQSRYLNFGQEGSTLGREEILKL 192
+ +AT + K +VL+ P A+ +L D F V +++ S L E L
Sbjct: 9 VATMATSSSTEKLPRVLIVKR---PDAMAVLGDGF-VASTKFEILKAFESPLPLPEFLAY 64
Query: 193 -IPGCSALVWISNLPITNEILDAAGTQLKIVSTVSAGYNHCNPEELRARGIQLTNTPNVL 369
SA++ P+T +++ L++V T SAG +H + E R RGI + N +
Sbjct: 65 HSDSISAIIAPVAAPVTADLIRIL-PNLRLVVTTSAGVDHVDLVECRRRGISVANAGSSF 123
Query: 370 SPAVAEVAVGLLLSASRRFTENLDQVRRGEWEIGFDKVLGQDLRDSTVGIIGLGGIGQAV 549
S VA+ AVGLL+ RR + V++ W + D LG L +GI+GLG IG V
Sbjct: 124 SEDVADTAVGLLIDVFRRISAANRFVKQRFWPLKGDYPLGSKLGRKRIGIVGLGSIGSKV 183
Query: 550 VKRLSGFDVARFIYSGHREKP 612
RL F + YS KP
Sbjct: 184 ATRLDAFG-CQISYSSRNRKP 203
>At1g12550.1 68414.m01455 oxidoreductase family protein similar to
glyoxylate reductase from Homo sapiens (gi:6002730);
contains Pfam D-isomer specific 2-hydroxyacid
dehydrogenase, NAD binding domain PF02826
Length = 323
Score = 81.4 bits (192), Expect = 4e-16
Identities = 49/121 (40%), Positives = 63/121 (52%)
Frame = +1
Query: 208 ALVWISNLPITNEILDAAGTQLKIVSTVSAGYNHCNPEELRARGIQLTNTPNVLSPAVAE 387
A V LP+T+E+L + L+I+ S G +H + + RGI +TN N S VA+
Sbjct: 55 AFVISGRLPVTDELLSHLPS-LQILVCTSVGIDHIDLAACKRRGIVITNAGNAFSDDVAD 113
Query: 388 VAVGLLLSASRRFTENLDQVRRGEWEIGFDKVLGQDLRDSTVGIIGLGGIGQAVVKRLSG 567
AVGLL+S RR VR G W D LG + VGI+GLG IG V KRL
Sbjct: 114 CAVGLLISVLRRIPAADRYVRSGNWAKFGDFQLGSKVSGKRVGIVGLGSIGSFVAKRLES 173
Query: 568 F 570
F
Sbjct: 174 F 174
>At1g79870.1 68414.m09330 oxidoreductase family protein contains
Pfam profile: PF02826 D-isomer specific 2-hydroxyacid
dehydrogenase, NAD binding domain; similar to glyoxylate
reductase from Thermococcus litoralis [gi:13515409]
Length = 313
Score = 77.4 bits (182), Expect = 7e-15
Identities = 44/108 (40%), Positives = 65/108 (60%)
Frame = +1
Query: 271 LKIVSTVSAGYNHCNPEELRARGIQLTNTPNVLSPAVAEVAVGLLLSASRRFTENLDQVR 450
L+IVS+ S G + + + + +GI++TNTP+VL+ VA++A+GL+L+ RR E VR
Sbjct: 68 LEIVSSFSVGLDKIDLGKCKEKGIRVTNTPDVLTEDVADLAIGLILALLRRLCECDRYVR 127
Query: 451 RGEWEIGFDKVLGQDLRDSTVGIIGLGGIGQAVVKRLSGFDVARFIYS 594
G+W+ G + L +VGIIGLG IG A+ KR F YS
Sbjct: 128 SGKWKQG-EFQLTTKFSGKSVGIIGLGRIGTAIAKRAEAFSCPINYYS 174
>At1g17745.1 68414.m02196 D-3-phosphoglycerate dehydrogenase /
3-PGDH identical to SP|O04130
Length = 624
Score = 69.7 bits (163), Expect = 1e-12
Identities = 40/154 (25%), Positives = 71/154 (46%)
Frame = +1
Query: 166 LGREEILKLIPGCSALVWISNLPITNEILDAAGTQLKIVSTVSAGYNHCNPEELRARGIQ 345
L E++ K + AL+ S +T E+ +AA +LK+V G ++ + + G
Sbjct: 111 LSPEDLKKKVAESDALIVRSGTKVTREVFEAAKGRLKVVGRAGVGIDNVDLQAATEHGCL 170
Query: 346 LTNTPNVLSPAVAEVAVGLLLSASRRFTENLDQVRRGEWEIGFDKVLGQDLRDSTVGIIG 525
+ N P + A AE + LL S +R + ++ G+WE K +G L T+ ++G
Sbjct: 171 VVNAPTANTVAAAEHGIALLASMARNVAQADASIKAGKWE--RSKYVGVSLVGKTLAVMG 228
Query: 526 LGGIGQAVVKRLSGFDVARFIYSGHREKPEAKAL 627
G +G V +R G + + + A+AL
Sbjct: 229 FGKVGTEVARRAKGLGMTVISHDPYAPADRARAL 262
>At1g68010.1 68414.m07769 glycerate dehydrogenase / NADH-dependent
hydroxypyruvate reductase identical to hydroxypyruvate
reductase (HPR) GB:D85339 [Arabidopsis thaliana] (Plant
Cell Physiol 1997 Apr;38(4):449-55)
Length = 386
Score = 63.3 bits (147), Expect = 1e-10
Identities = 38/101 (37%), Positives = 56/101 (55%), Gaps = 2/101 (1%)
Frame = +1
Query: 274 KIVSTVSAGYNHCNPEELRARGIQLTNTPNVLSPAVAEVAVGLLLSASRRFTENLDQVRR 453
K S ++ GYN+ + E GI + NTP VL+ AE+A L L+A+RR E + +R
Sbjct: 88 KAFSNMAVGYNNVDVEAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRG 147
Query: 454 GEWEIGFDKV-LGQDLRDSTVGIIGLGGIGQAVVKRL-SGF 570
G +E + +G L+ TVG+IG G IG A + + GF
Sbjct: 148 GLYEGWLPHLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGF 188
>At3g19480.1 68416.m02469 D-3-phosphoglycerate dehydrogenase,
putative / 3-PGDH, putative similar to SP:O04130 from
[Arabidopsis thaliana]
Length = 588
Score = 60.5 bits (140), Expect = 9e-10
Identities = 35/154 (22%), Positives = 69/154 (44%)
Frame = +1
Query: 166 LGREEILKLIPGCSALVWISNLPITNEILDAAGTQLKIVSTVSAGYNHCNPEELRARGIQ 345
L EE+ I C AL+ S + ++ +++ +LK+V G ++ + G
Sbjct: 75 LSLEELCTKISLCDALIVRSGTKVGRDVFESSRGRLKVVGRAGVGIDNVDLAAATEYGCL 134
Query: 346 LTNTPNVLSPAVAEVAVGLLLSASRRFTENLDQVRRGEWEIGFDKVLGQDLRDSTVGIIG 525
+ N P + A AE + LL + +R + ++ G+W +K +G L T+ ++G
Sbjct: 135 VVNAPTANTVAAAEHGIALLTAMARNIAQADASIKAGKWT--RNKYVGVSLVGKTLAVLG 192
Query: 526 LGGIGQAVVKRLSGFDVARFIYSGHREKPEAKAL 627
G +G V +R G + + + A+A+
Sbjct: 193 FGKVGSEVARRARGLGMHVITHDPYAPADRARAI 226
>At4g34200.1 68417.m04854 D-3-phosphoglycerate dehydrogenase,
putative / 3-PGDH, putative similar to phosphoglycerate
dehydrogenase, Arabidopsis thaliana, SP:O04130
Length = 603
Score = 59.7 bits (138), Expect = 2e-09
Identities = 36/151 (23%), Positives = 68/151 (45%)
Frame = +1
Query: 175 EEILKLIPGCSALVWISNLPITNEILDAAGTQLKIVSTVSAGYNHCNPEELRARGIQLTN 354
EE+ I C AL+ S + E+ +++ +LK+V G ++ + G + N
Sbjct: 93 EELNIKISLCDALIVRSGTKVGREVFESSHGRLKVVGRAGVGIDNVDLSAATEFGCLVVN 152
Query: 355 TPNVLSPAVAEVAVGLLLSASRRFTENLDQVRRGEWEIGFDKVLGQDLRDSTVGIIGLGG 534
P + A AE + L+ + +R + V+ GEW+ +K +G L T+ ++G G
Sbjct: 153 APTANTIAAAEHGIALMAAMARNVAQADASVKAGEWK--RNKYVGVSLVGKTLAVLGFGK 210
Query: 535 IGQAVVKRLSGFDVARFIYSGHREKPEAKAL 627
+G V +R G + + + A A+
Sbjct: 211 VGTEVARRAKGLGMRVIAHDPYAPADRAHAI 241
>At2g45630.1 68415.m05673 oxidoreductase family protein low
similarity to SP|P36234 Glycerate dehydrogenase (EC
1.1.1.29) (NADH-dependent hydroxypyruvate reductase)
{Hyphomicrobium methylovorum}; contains Pfam profile
PF00389: D-isomer specific 2-hydroxyacid dehydrogenase,
catalytic domain
Length = 186
Score = 56.0 bits (129), Expect = 2e-08
Identities = 48/167 (28%), Positives = 78/167 (46%), Gaps = 1/167 (0%)
Frame = +1
Query: 13 IPCLATDDTMTKNLKVLVSSNDYPPTALKILEDHFTVLQSRYLNFGQEGSTLGREEILKL 192
+ +AT + K +VL+ P A+ +L D F V +++ S L E L
Sbjct: 9 VATMATSSSTEKLPRVLIVKR---PDAMAVLGDGF-VASTKFEILKAFESPLPLPEFLAY 64
Query: 193 -IPGCSALVWISNLPITNEILDAAGTQLKIVSTVSAGYNHCNPEELRARGIQLTNTPNVL 369
SA++ P+T +++ L++V T SAG +H + E R RGI + N +
Sbjct: 65 HSDSISAIIAPVAAPVTADLIRIL-PNLRLVVTTSAGVDHVDLVECRRRGISVANAGSSF 123
Query: 370 SPAVAEVAVGLLLSASRRFTENLDQVRRGEWEIGFDKVLGQDLRDST 510
S VA+ AVGLL+ RR + V++ W + D LG + + T
Sbjct: 124 SEDVADTAVGLLIDVFRRISAANRFVKQRFWPLKGDYPLGSKVCNIT 170
>At5g14780.1 68418.m01734 formate dehydrogenase (FDH) identical to
GI:7677266
Length = 384
Score = 55.6 bits (128), Expect = 3e-08
Identities = 38/133 (28%), Positives = 61/133 (45%), Gaps = 2/133 (1%)
Frame = +1
Query: 178 EILKLIPGCSALVWISNLP--ITNEILDAAGTQLKIVSTVSAGYNHCNPEELRARGIQLT 351
E+ K IP L+ P +T E + A LK++ T G +H + + A G+ +
Sbjct: 88 ELEKHIPDLHVLISTPFHPAYVTAERIKKA-KNLKLLLTAGIGSDHIDLQAAAAAGLTVA 146
Query: 352 NTPNVLSPAVAEVAVGLLLSASRRFTENLDQVRRGEWEIGFDKVLGQDLRDSTVGIIGLG 531
+VAE + +L R F +QV +GEW + DL T+G +G G
Sbjct: 147 EVTGSNVVSVAEDELMRILILMRNFVPGYNQVVKGEWNVAGIAYRAYDLEGKTIGTVGAG 206
Query: 532 GIGQAVVKRLSGF 570
IG+ +++RL F
Sbjct: 207 RIGKLLLQRLKPF 219
>At5g28310.1 68418.m03437 oxidoreductase-related low similarity to
glyoxylate reductase from Thermococcus litoralis
[gi:13515409]
Length = 233
Score = 33.9 bits (74), Expect = 0.089
Identities = 19/48 (39%), Positives = 22/48 (45%)
Frame = +1
Query: 475 DKVLGQDLRDSTVGIIGLGGIGQAVVKRLSGFDVARFIYSGHREKPEA 618
D L Q +GI+GLG IG V RL F + YS KP A
Sbjct: 105 DPDLNQYQSKKRIGIVGLGSIGSKVATRLKAFG-CQISYSSRNRKPYA 151
>At4g15545.1 68417.m02375 expressed protein
Length = 337
Score = 30.3 bits (65), Expect = 1.1
Identities = 17/41 (41%), Positives = 23/41 (56%)
Frame = -2
Query: 584 NLATSKPLRRLTTACPIPPKPMIPTVLSRRSCPRTLSKPIS 462
+L+ S PL TT + P P P +LS P+T S+PIS
Sbjct: 196 SLSASLPLVSQTTTPRLTP-PGSPPILSASGTPKTTSRPIS 235
>At5g66120.2 68418.m08330 3-dehydroquinate synthase, putative
similar to aroB [Neisseria gonorrhoeae][GI:2661441];
contains 3-dehydroquinate synthase domain PF01761
Length = 442
Score = 29.5 bits (63), Expect = 1.9
Identities = 25/85 (29%), Positives = 38/85 (44%), Gaps = 6/85 (7%)
Frame = -2
Query: 584 NLATSKPLRRLTTACPIPPKPMIPTVLSRRSCPRTLS---KPISHSPLRT*SRFSVNLLE 414
N+A SK L + I P + V S +S P LS +S S +R + +N
Sbjct: 10 NVAASKNLNSFQSRAFIAPPTIFFPVASAKSKPGELSLSSTTLSRSRVRAGASQLMNEPL 69
Query: 413 ADSRS---PTATSATAGDRTFGVFV 348
D RS PT GDR++ +++
Sbjct: 70 NDQRSISSPTVVEVDLGDRSYPIYI 94
>At1g72190.1 68414.m08347 oxidoreductase family protein similar to
D-3-phosphoglycerate dehydrogenase from Arabidopsis
thaliana [SP|O04130], glyoxylate reductase from Homo
sapiens (gi:6002730); contains Pfam D-isomer specific
2-hydroxyacid dehydrogenase, NAD binding domain PF02826
Length = 373
Score = 29.5 bits (63), Expect = 1.9
Identities = 25/105 (23%), Positives = 49/105 (46%), Gaps = 3/105 (2%)
Frame = +1
Query: 265 TQLKIVSTVSAGYNHCNPEELRARGIQLTNTPNV---LSPAVAEVAVGLLLSASRRFTEN 435
+ +K++ G + + + GI++ P+ + + +E+A+ L+L ++ +N
Sbjct: 114 SNIKLIMQYGVGLDGVDIDAATKHGIKVARIPSEGTGNAASCSEMAIYLMLGLLKK--QN 171
Query: 436 LDQVRRGEWEIGFDKVLGQDLRDSTVGIIGLGGIGQAVVKRLSGF 570
Q+ +G + G L TV I+G G IG + KRL F
Sbjct: 172 EMQISLRNRLLG--EPTGDTLLGKTVFILGYGNIGIELAKRLKPF 214
>At4g39780.1 68417.m05633 AP2 domain-containing transcription
factor, putative similar to AP2 domain containing
protein RAP2.4,Arabidopsis thaliana
Length = 272
Score = 28.7 bits (61), Expect = 3.3
Identities = 15/59 (25%), Positives = 26/59 (44%)
Frame = +1
Query: 286 TVSAGYNHCNPEELRARGIQLTNTPNVLSPAVAEVAVGLLLSASRRFTENLDQVRRGEW 462
T S G N P ++ QL N++SP +A V + +++ + Q G+W
Sbjct: 46 TTSLGLNQLTPYQIHQIQNQLNQRRNIISPNLAPKPVPMKNMTAQKLYRGVRQRHWGKW 104
>At1g72680.1 68414.m08405 cinnamyl-alcohol dehydrogenase, putative
similar to cinnamyl-alcohol dehydrogenase GB:AAC35846
[Medicago sativa], SP|Q08350 [Picea abies]
Length = 355
Score = 28.7 bits (61), Expect = 3.3
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +1
Query: 508 TVGIIGLGGIGQAVVKRLSGFDVARFIYSGHREKPE 615
++G+IGLGG+G VK F ++ ++S K E
Sbjct: 184 SLGVIGLGGLGHMAVKFGKAFGLSVTVFSTSISKKE 219
>At4g32420.1 68417.m04615 peptidyl-prolyl cis-trans isomerase
cyclophilin-type family protein weak similarity to
CARS-Cyp [Homo sapiens] GI:1117968; contains Pfam
profile PF00160: peptidyl-prolyl cis-trans isomerase,
cyclophilin-type
Length = 837
Score = 28.3 bits (60), Expect = 4.4
Identities = 15/43 (34%), Positives = 25/43 (58%)
Frame = -2
Query: 485 RTLSKPISHSPLRT*SRFSVNLLEADSRSPTATSATAGDRTFG 357
R+ SK S SP+ T SV+ + +RSP+ + +T+ D + G
Sbjct: 786 RSRSKSYSKSPIGTGKARSVSRSPSKARSPSKSDSTSSDNSPG 828
>At4g15215.1 68417.m02332 ABC transporter family protein similar to
PDR5-like ABC transporter [Spirodela polyrhiza]
GI:1514643; contains Pfam profile PF00005: ABC
transporter
Length = 1390
Score = 28.3 bits (60), Expect = 4.4
Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Frame = +1
Query: 361 NVLSPAVAEVAVGLLLSASRRFTENLDQVRRGEW--EIGFDKVLGQDLRDSTVGIIGLGG 534
++ SP + V L SA R N+D + E E+ + V +D++DS VG+ G+ G
Sbjct: 884 DIHSPNIT-VEESLKYSAWLRLPYNIDAKTKNELVKEV-LETVELEDIKDSMVGLPGISG 941
Query: 535 IGQAVVKRLS 564
+ KRL+
Sbjct: 942 LSTEQRKRLT 951
>At5g13730.1 68418.m01598 RNA polymerase sigma subunit SigD (sigD) /
sigma-like factor (SIG4) identical to RNA polymerase
sigma subunit SigD [Arabidopsis thaliana] GI:4972296,
sigma-like factor [Arabidopsis thaliana] GI:3983260;
contains Pfam profiles PF04545: Sigma-70, region 4,
PF04539: Sigma-70 region 3, PF04542: Sigma-70 region 2
Length = 419
Score = 27.9 bits (59), Expect = 5.8
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 3/43 (6%)
Frame = -2
Query: 581 LATSKPLRRLTTACPIPPKPMI-PTVLSRRSC--PRTLSKPIS 462
+AT+ P T CP PP P I P + + C +LS P S
Sbjct: 1 MATTIPTTATATMCPSPPVPTISPLLRTTHQCQPSPSLSSPFS 43
>At4g32375.1 68417.m04610 glycoside hydrolase family 28 protein /
polygalacturonase (pectinase) family protein similar to
polygalacturonase [Lycopersicon esculentum] GI:4325090;
contains Pfam profile PF00295: Polygalacturonase
(pectinase)
Length = 486
Score = 27.9 bits (59), Expect = 5.8
Identities = 14/43 (32%), Positives = 19/43 (44%)
Frame = -2
Query: 581 LATSKPLRRLTTACPIPPKPMIPTVLSRRSCPRTLSKPISHSP 453
LA +KP R + P P M P L+ PR + P+ P
Sbjct: 382 LAPAKPPRHVGPLMPTKPPTMFPKPLAPAKSPRHVELPMPTKP 424
>At1g18540.1 68414.m02313 60S ribosomal protein L6 (RPL6A) similar
to 60S ribosomal protein L6 GI:7208784 from [Cicer
arietinum]
Length = 233
Score = 27.9 bits (59), Expect = 5.8
Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = -1
Query: 621 FSFGFFPVSRVNKPGDIKTTKTFDDSLSNTTQADDPY-GAVAE 496
F P+ RVN+ I T+ D S NT + DD Y G VAE
Sbjct: 124 FKINGVPLRRVNQAYVIGTSTKIDISGVNTEKFDDKYFGKVAE 166
>At4g37980.1 68417.m05367 mannitol dehydrogenase, putative (ELI3-1)
identical to GI:16267
Length = 357
Score = 27.5 bits (58), Expect = 7.7
Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Frame = +1
Query: 478 KVLGQDLRDSTVGIIGLGGIGQAVVKRLSGFDV-ARFIYSGHREKPEA 618
K G D +G++GLGG+G VK I + R++ EA
Sbjct: 172 KYHGLDKPGMHIGVVGLGGLGHVAVKFAKAMGTKVTVISTSERKRDEA 219
>At4g36810.1 68417.m05221 geranylgeranyl pyrophosphate synthase
(GGPS1) / GGPP synthetase / farnesyltranstransferase
identical to GI:413730 to geranylgeranyl pyrophosphate
synthase, chloroplast precursor GB:P34802 from
[Arabidopsis thaliana] synonymous with
farnesyltranstransferase
Length = 371
Score = 27.5 bits (58), Expect = 7.7
Identities = 14/23 (60%), Positives = 15/23 (65%)
Frame = -2
Query: 497 RSCPRTLSKPISHSPLRT*SRFS 429
RSCP TL+KPIS RT S S
Sbjct: 30 RSCPITLTKPISFRSKRTVSSSS 52
>At4g15230.1 68417.m02333 ABC transporter family protein similar to
pleiotropic drug resistance like protein [Nicotiana
tabacum] GI:20522008, PDR5-like ABC transporter
[Spirodela polyrhiza] GI:1514643; contains Pfam profile
PF00005: ABC transporter
Length = 1326
Score = 27.5 bits (58), Expect = 7.7
Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
Frame = +1
Query: 361 NVLSPAVAEVAVGLLLSASRRFTENLDQVRRGEW--EIGFDKVLGQDLRDSTVGIIGLGG 534
++ SP + V L SA R N+D + E E+ + V D++DS VG+ G+ G
Sbjct: 820 DIHSPNIT-VEESLKYSAWLRLPYNIDSKTKNELVKEV-LETVELDDIKDSVVGLPGISG 877
Query: 535 IGQAVVKRLS 564
+ KRL+
Sbjct: 878 LSIEQRKRLT 887
>At1g63940.3 68414.m07239 monodehydroascorbate reductase, putative
similar to monodehydroascorbate reductase GB:AAD28178
[Brassica juncea]
Length = 416
Score = 27.5 bits (58), Expect = 7.7
Identities = 10/19 (52%), Positives = 16/19 (84%), Gaps = 1/19 (5%)
Frame = +2
Query: 419 EGSPR-IWIKYAGENGRSV 472
EGSPR +W ++ G+NG+S+
Sbjct: 398 EGSPRKVWWQFFGDNGKSI 416
>At1g05350.1 68414.m00542 thiF family protein low similarity to
SP|P30138 Adenylyltransferase thiF (EC 2.7.7.-)
{Escherichia coli}; contains Pfam profile PF00899: ThiF
family
Length = 445
Score = 27.5 bits (58), Expect = 7.7
Identities = 9/31 (29%), Positives = 19/31 (61%)
Frame = +1
Query: 496 LRDSTVGIIGLGGIGQAVVKRLSGFDVARFI 588
+R+ +V I+G+GG+G + L+ + R +
Sbjct: 80 IREFSVAIVGIGGVGSVAAEMLTRCGIGRLL 110
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,585,661
Number of Sequences: 28952
Number of extensions: 276087
Number of successful extensions: 895
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 863
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 893
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1275599520
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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