Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30817
         (733 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC12B10.11 |exg2||glucan 1,3-beta-glucosidase Exg2|Schizosacch...    27   2.1  
SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase Abc4|...    27   3.6  
SPBC1D7.03 |mug80||cyclin Clg1 |Schizosaccharomyces pombe|chr 2|...    27   3.6  
SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   4.8  

>SPAC12B10.11 |exg2||glucan 1,3-beta-glucosidase
           Exg2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 570

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 11/50 (22%), Positives = 23/50 (46%)
 Frame = +2

Query: 65  NWTRGRLLAEIDWMESVPFGFEHKKVKEEIRGTTKEKFKDDRFQK*FTVY 214
           +W  G  L +++W++    G E+ +   +I       F   R++   T+Y
Sbjct: 284 SWNHGGYLNQMEWLDGTVKGEENSQFTLKIHERLASFFSQKRYRNVVTIY 333


>SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase
           Abc4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1469

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 11/24 (45%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
 Frame = +1

Query: 358 PSIFEHS-SRGLIPIYLYAIYFWL 426
           PS +++S   GL+ +YLY IY W+
Sbjct: 50  PSWYKYSLESGLVCLYLYLIYRWI 73


>SPBC1D7.03 |mug80||cyclin Clg1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 461

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
 Frame = -2

Query: 189 RSSLNFSLVVPRISSFTFLCSNPKGTDSIQSISA--SNLPLVQLMDRKTTITT*L*YPDA 16
           RS +   L  P +S F  + S+    +S  S++A  S+ P+  L  R+ +    +  PD 
Sbjct: 10  RSQVQPPLAAPGLSMFAPVSSS-NSANSASSVAALLSHAPMYGLGQRRPSFLPGVSVPDT 68

Query: 15  LSVR 4
           LSVR
Sbjct: 69  LSVR 72


>SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 842

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +1

Query: 634 INTHGIHVSLSHNVQANTVQLSERNTLN 717
           INTHG  V+ SH   A+   L E ++ N
Sbjct: 119 INTHGTVVNSSHETIASATSLFENSSSN 146


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,105,134
Number of Sequences: 5004
Number of extensions: 65796
Number of successful extensions: 157
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)