Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30817
         (733 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1027 + 33912773-33912816,33913245-33913401,33913492-339135...    29   3.8  
08_01_1013 + 10251463-10251858,10252366-10252434,10252545-102526...    28   6.6  
06_03_0477 - 21250811-21250981,21251261-21251374,21251447-212516...    28   6.6  

>01_06_1027 +
           33912773-33912816,33913245-33913401,33913492-33913589,
           33913680-33913775,33914422-33914681,33914778-33915088,
           33915154-33915297,33915452-33915589,33915674-33915721,
           33916328-33916408,33916705-33916864,33917411-33917532
          Length = 552

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 12/20 (60%), Positives = 15/20 (75%)
 Frame = +1

Query: 22  GISKLCRNSGFSIHQLDQRE 81
           G+  L ++ GFSIHQL QRE
Sbjct: 271 GLKALLKSRGFSIHQLAQRE 290


>08_01_1013 +
           10251463-10251858,10252366-10252434,10252545-10252652,
           10253261-10253326,10254258-10254395,10255047-10255094,
           10256292-10256398,10257228-10257302,10258317-10258368,
           10258485-10259068,10259944-10260150,10260236-10260407
          Length = 673

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +2

Query: 68  WTRGRLLAEIDWMESVPFGFEHKKVKEEIRGTTKEKF 178
           W R R+L E    +S+P    H+ +K ++    K+KF
Sbjct: 404 WKRDRILLEFRKKDSIPLKDIHRIIKVKLDDNLKKKF 440


>06_03_0477 -
           21250811-21250981,21251261-21251374,21251447-21251613,
           21252051-21252153,21252315-21252367,21252438-21252570,
           21252835-21253183,21253685-21254003,21254519-21254717
          Length = 535

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 8/66 (12%)
 Frame = +2

Query: 116 PFGFEHKKVKEEIRGTTKEKFK--DDRFQK*FTVYIQNCKSIFITLI-----YADE-KHI 271
           PF     K K ++   T EKF+   ++ QK F   +Q CK +  TL+     + DE  H+
Sbjct: 250 PFEPPKPKTKHKVDIDTVEKFQMLREQEQKYFDEMVQKCKDVGATLVICQWGFDDEANHL 309

Query: 272 ILNRCL 289
           +++R L
Sbjct: 310 LMHRNL 315


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,788,551
Number of Sequences: 37544
Number of extensions: 339280
Number of successful extensions: 695
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 679
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 695
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1921741964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)