Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30817
         (733 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81531-6|CAB04317.2|  330|Caenorhabditis elegans Hypothetical pr...    29   3.4  
U80446-3|AAL77180.1|  889|Caenorhabditis elegans Nuclear pore co...    29   3.4  
U80446-2|AAB37803.1| 1562|Caenorhabditis elegans Nuclear pore co...    29   3.4  
U41556-11|AAK39190.2|  365|Caenorhabditis elegans Hypothetical p...    29   3.4  
AC006747-5|AAF60510.3|  310|Caenorhabditis elegans Hypothetical ...    29   3.4  
AC024882-17|AAF60937.1|  321|Caenorhabditis elegans Serpentine r...    28   5.9  
AL032647-7|CAA21691.2|  360|Caenorhabditis elegans Hypothetical ...    28   7.8  

>Z81531-6|CAB04317.2|  330|Caenorhabditis elegans Hypothetical
           protein F36D3.6 protein.
          Length = 330

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 19/64 (29%), Positives = 31/64 (48%)
 Frame = +2

Query: 491 VLNRIVFLLCVLFTIRQSQATYRLTCSFNPVLCK*KFLIQVQIKISNI*IPTVYM*VFHI 670
           +L  + FL+ VLF +++S+A    T      L K    IQV + +    +P +YM +   
Sbjct: 208 MLQTLYFLIRVLFHLQKSKAHSEKTARMQKQLFK-ALCIQVSVPLVFAAVPCIYMNISAA 266

Query: 671 MYKL 682
            Y L
Sbjct: 267 FYYL 270


>U80446-3|AAL77180.1|  889|Caenorhabditis elegans Nuclear pore
           complex protein protein6, isoform b protein.
          Length = 889

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 16/53 (30%), Positives = 26/53 (49%)
 Frame = +2

Query: 14  NASGYQSYVVIVVFLSINWTRGRLLAEIDWMESVPFGFEHKKVKEEIRGTTKE 172
           ++S  ++Y +  +  +I W +GR+  + DW  SV         KEE  G T E
Sbjct: 445 SSSAKKTYSMKRISFAIQWKKGRVFTDFDW-HSVRQFTSPATTKEEPIGNTDE 496


>U80446-2|AAB37803.1| 1562|Caenorhabditis elegans Nuclear pore
           complex protein protein6, isoform a protein.
          Length = 1562

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 16/53 (30%), Positives = 26/53 (49%)
 Frame = +2

Query: 14  NASGYQSYVVIVVFLSINWTRGRLLAEIDWMESVPFGFEHKKVKEEIRGTTKE 172
           ++S  ++Y +  +  +I W +GR+  + DW  SV         KEE  G T E
Sbjct: 445 SSSAKKTYSMKRISFAIQWKKGRVFTDFDW-HSVRQFTSPATTKEEPIGNTDE 496


>U41556-11|AAK39190.2|  365|Caenorhabditis elegans Hypothetical
           protein C25B8.5 protein.
          Length = 365

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 12/36 (33%), Positives = 23/36 (63%)
 Frame = -3

Query: 722 NIFKVFLSDSWTVLACTLCERLTCIPWVFIYLIFLS 615
           N+ ++ L  +W+ L+C   +R+  I WV +YL+ L+
Sbjct: 223 NLARIHLF-TWSELSCEGKQRMNWIAWVLVYLLTLN 257


>AC006747-5|AAF60510.3|  310|Caenorhabditis elegans Hypothetical
           protein Y39A3A.3 protein.
          Length = 310

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = +1

Query: 571 FQSCAM*VEVPNSSTDKNIKYINTHGIHVSLSHNVQANTVQLSE 702
           F + ++ +E+   +TD NIKY +  G+ V L      +T QL E
Sbjct: 86  FGTSSLSIEMDPLNTDGNIKYCSGSGVIVGLFRTENGDTHQLCE 129


>AC024882-17|AAF60937.1|  321|Caenorhabditis elegans Serpentine
           receptor, class z protein28 protein.
          Length = 321

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 17/48 (35%), Positives = 24/48 (50%)
 Frame = +1

Query: 388 LIPIYLYAIYFWLIIVLASVHPFFNYTF*IQFRLSFK*NSFFIVRIIY 531
           L  +Y++   F LII+L ++  FF + F    R S K    FI  I Y
Sbjct: 99  LFYLYIFDQVFHLIILLLAIQRFFLFYFPSSERSSIKFQKLFIKYINY 146


>AL032647-7|CAA21691.2|  360|Caenorhabditis elegans Hypothetical
           protein Y57A10B.4 protein.
          Length = 360

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 10/32 (31%), Positives = 20/32 (62%)
 Frame = -3

Query: 719 IFKVFLSDSWTVLACTLCERLTCIPWVFIYLI 624
           +  ++LS S T+L C + E +    W+F++L+
Sbjct: 261 VIVIYLSLSLTMLICLVFELIQGYDWIFVHLL 292


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,679,206
Number of Sequences: 27780
Number of extensions: 351407
Number of successful extensions: 875
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 844
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 874
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1714401074
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)