Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30817
         (733 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor p...    23   2.2  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    23   2.2  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    23   3.9  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    22   6.8  

>AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor
           protein.
          Length = 139

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = +1

Query: 382 RGLIPIYLYAIYFWLIIVLASVHPFFNYTF*IQFRLSFK 498
           R  I   ++++ FWL    ++++P     F   FR +FK
Sbjct: 36  RNCIHPTVFSVLFWLGYCNSAINPCIYALFSKDFRFAFK 74


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = +1

Query: 382 RGLIPIYLYAIYFWLIIVLASVHPFFNYTF*IQFRLSFK 498
           R  I   ++++ FWL    ++++P     F   FR +FK
Sbjct: 484 RNCIHPTVFSVLFWLGYCNSAINPCIYALFSKDFRFAFK 522


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = +2

Query: 59  SINWTRGRLLAEI 97
           S+NWT G+L AE+
Sbjct: 519 SVNWTIGQLEAEV 531


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = +3

Query: 168 KRNSKMTVFKNNSQFIFKIVK 230
           K+   M  + NNS++ FK++K
Sbjct: 203 KKGFHMDGYTNNSKWDFKVIK 223


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 210,820
Number of Sequences: 438
Number of extensions: 4915
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22779405
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)