Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30816
         (707 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch...    31   0.21 
SPAC1F12.05 |||conserved fungal protein|Schizosaccharomyces pomb...    27   2.6  
SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr 1||...    27   3.5  
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar...    27   3.5  
SPBC428.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   6.1  
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c...    25   8.0  

>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 455

 Score = 30.7 bits (66), Expect = 0.21
 Identities = 14/49 (28%), Positives = 25/49 (51%)
 Frame = -3

Query: 312 RFSSFQNILLNYFQSNVNSFPNFHKEFVTFKSLTRSINF*TYSRSIEGV 166
           RF+   N+ LN FQ+N+  +P  H   VT+  +  +      S S++ +
Sbjct: 247 RFAGSLNVDLNEFQTNLVPYPRIHFPLVTYSPIVSAAKAFHESNSVQEI 295


>SPAC1F12.05 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 377

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -3

Query: 462 TRLLRSKAHNFGAKFDCSVLIFHCEINSQLLAK 364
           TRLL +  H  G K D   +IF   I++ LL+K
Sbjct: 243 TRLLGNNEHKSGWKEDGDRIIFEIPISTSLLSK 275


>SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1101

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 15/59 (25%), Positives = 22/59 (37%)
 Frame = +1

Query: 1   LGKHRLFLARSIETFDRSQFEQSFLKFNLNGNHSNTLAQLVNHLTVSSNLFVFYPDALN 177
           L K    L   +   D +   Q  LKFN +     +  + V HL      F ++ D  N
Sbjct: 753 LSKSCATLPSQMYNLDHNNISQKSLKFNTHNTSKASAEKTVEHLEAFKGGFKYHTDLKN 811


>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
           2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 449

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 13/49 (26%), Positives = 23/49 (46%)
 Frame = -3

Query: 312 RFSSFQNILLNYFQSNVNSFPNFHKEFVTFKSLTRSINF*TYSRSIEGV 166
           RF    N+ L  FQ+N+  +P  H   VT+  +  +      S S++ +
Sbjct: 243 RFEGSLNVDLAEFQTNLVPYPRIHFPLVTYAPIVSAAKAFHESNSVQEI 291


>SPBC428.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 115

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
 Frame = +1

Query: 28  RSIETFDRS--QFEQSFLKFNLNGNHSNTLAQLVNHLTV 138
           +++E   +S  ++E SFLK   NGN   +L   +N LT+
Sbjct: 29  QTVENVGKSFEKYETSFLKSLFNGNLGLSLPSAINILTL 67


>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1717

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +1

Query: 82   NLNGNHSNTLAQLVNHLTVSSNLFVFY 162
            N+NGN+S TLA       +  NLF  Y
Sbjct: 1672 NMNGNYSTTLASPELEEKMDMNLFKVY 1698


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,693,883
Number of Sequences: 5004
Number of extensions: 52185
Number of successful extensions: 116
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)