Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30816
         (707 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21143| Best HMM Match : Myosin_tail_1 (HMM E-Value=0.42)            29   4.9  
SB_30811| Best HMM Match : Homeobox (HMM E-Value=2.5e-26)              28   6.5  
SB_53178| Best HMM Match : Homeobox (HMM E-Value=2.5e-26)              28   6.5  
SB_6680| Best HMM Match : Astacin (HMM E-Value=0)                      28   8.5  

>SB_21143| Best HMM Match : Myosin_tail_1 (HMM E-Value=0.42)
          Length = 870

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = -3

Query: 231 VTFKSLTRSINF*TYSRSIEGVRIKHEEIGTDSQMIYELCKR 106
           +T K  TR +   T+ +    VRI HE++  + Q+ YE   R
Sbjct: 482 ITHKQATREVRI-THEQVTREVRITHEQVTREVQITYEQVTR 522


>SB_30811| Best HMM Match : Homeobox (HMM E-Value=2.5e-26)
          Length = 133

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +1

Query: 40  TFDRSQFEQSFLKFNLNGNHSNTLA 114
           T+  S F Q F     NGNHS T+A
Sbjct: 94  TYQNSSFVQPFHNAPFNGNHSTTMA 118


>SB_53178| Best HMM Match : Homeobox (HMM E-Value=2.5e-26)
          Length = 428

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +1

Query: 40  TFDRSQFEQSFLKFNLNGNHSNTLA 114
           T+  S F Q F     NGNHS T+A
Sbjct: 321 TYQNSSFVQPFHNAPFNGNHSTTMA 345


>SB_6680| Best HMM Match : Astacin (HMM E-Value=0)
          Length = 637

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = -1

Query: 557 SYLDVIKDMMSLTLRHKIEVDSTV*PQRQAG*HDYFA 447
           +Y+DV+ D +   LRH  E+     P+  +G +DY++
Sbjct: 188 TYIDVLWDNIKPFLRHTYEIKQGWHPKSVSGSYDYYS 224


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,098,618
Number of Sequences: 59808
Number of extensions: 344631
Number of successful extensions: 697
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 658
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 696
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1865706635
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)