Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30816
         (707 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032663-5|CAA21765.1|  896|Caenorhabditis elegans Hypothetical ...    28   5.7  
Z81588-2|CAB04712.1|  379|Caenorhabditis elegans Hypothetical pr...    28   7.5  
U41007-7|AAA82268.3|  516|Caenorhabditis elegans Intramembrane p...    27   9.9  

>AL032663-5|CAA21765.1|  896|Caenorhabditis elegans Hypothetical
           protein Y75B12B.6 protein.
          Length = 896

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 12/45 (26%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = +1

Query: 28  RSIETFDRSQF-EQSFLKFNLNGNHSNTLAQLVNHLTVSSNLFVF 159
           R + +FD+    + SF++FN++    +  AQ + H+   +N + F
Sbjct: 742 RHVYSFDKIMLNDMSFIQFNVHNESGSVFAQRILHIDTMNNGYRF 786


>Z81588-2|CAB04712.1|  379|Caenorhabditis elegans Hypothetical
           protein T07D10.2 protein.
          Length = 379

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = +3

Query: 84  FKREPLKHACTTRKSSDCQFQSL 152
           F R+ LK AC  RKSS+   QSL
Sbjct: 344 FNRKQLKRACPCRKSSEPLIQSL 366


>U41007-7|AAA82268.3|  516|Caenorhabditis elegans Intramembrane
           protease (impas)family protein 3 protein.
          Length = 516

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 18/63 (28%), Positives = 33/63 (52%)
 Frame = -3

Query: 291 ILLNYFQSNVNSFPNFHKEFVTFKSLTRSINF*TYSRSIEGVRIKHEEIGTDSQMIYELC 112
           ILL  F  +++ +  +H+E + + SL  S++F  Y     G  I ++ +   S  IY +C
Sbjct: 319 ILLESFSQHMSFYFYYHEESMMYASLLVSLSFGLY-HECSGNWISNDILAFAS--IYVVC 375

Query: 111 KRV 103
            R+
Sbjct: 376 SRI 378


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,551,818
Number of Sequences: 27780
Number of extensions: 280092
Number of successful extensions: 680
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 663
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 680
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1645110168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)