Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30816
         (707 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855486-1|ABH88173.1|  104|Apis mellifera chemosensory protein ...    26   0.30 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   2.1  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    23   2.8  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    23   2.8  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    21   8.7  

>DQ855486-1|ABH88173.1|  104|Apis mellifera chemosensory protein 5
           protein.
          Length = 104

 Score = 26.2 bits (55), Expect = 0.30
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -3

Query: 339 SNHINRVTSRFSSFQNILLNYFQSN 265
           +NH NR TSR     N L+ + Q N
Sbjct: 62  NNHCNRCTSRQIGIANTLIPFMQQN 86


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 6/21 (28%), Positives = 12/21 (57%)
 Frame = -1

Query: 401  FFIVKLIPSCWLNINTNRHKN 339
            F ++ L+P+ W ++    H N
Sbjct: 1519 FVVLDLVPATWYHLRVTAHNN 1539


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -1

Query: 572 NSSGGSYLDVIKDMMSLTLRHKIEVD 495
           NS G S+LD + ++  L ++  +EVD
Sbjct: 233 NSLGLSWLDQLTNLGFLGMKESVEVD 258


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -1

Query: 572 NSSGGSYLDVIKDMMSLTLRHKIEVD 495
           NS G S+LD + ++  L ++  +EVD
Sbjct: 271 NSLGLSWLDQLTNLGFLGMKESVEVD 296


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +1

Query: 493 LSTSILCLKVSDIISFMTSR*LPPDEFLIHLLARY 597
           L  SIL   V  +   + S+ LPP   ++ L+A+Y
Sbjct: 267 LGISILLSLV--VFLLLVSKILPPTSLVLPLIAKY 299


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,456
Number of Sequences: 438
Number of extensions: 3460
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21804885
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)