Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30815
         (690 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC338.13 |cog4||Golgi transport complex subunit Cog4 |Schizosa...    28   1.5  
SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomy...    27   2.6  
SPAPB24D3.08c |||NADP-dependent oxidoreductase |Schizosaccharomy...    26   4.5  
SPAC4F8.15 |itr1|SPAC7D4.01|myo-inositol transporter Itr1|Schizo...    26   5.9  

>SPCC338.13 |cog4||Golgi transport complex subunit Cog4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 738

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
 Frame = -3

Query: 298 ESY*TLVSDTTTNKHSAESIQALISSRL--FFTFT-DEKAVVKAVKTY 164
           E+Y TLV+  + +K   +SI   +SSRL   F F  D+K V K++  +
Sbjct: 507 ENYITLVNSASLSKQYLKSIVDGVSSRLEEVFAFAKDQKLVKKSIDNF 554


>SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1142

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 4/32 (12%)
 Frame = -3

Query: 517  LEKCSFNELDLSIHY----NVRKDLENYLRDL 434
            L +CSF E+DL++       + KD+  YL+DL
Sbjct: 998  LRECSFKEVDLALELLERATITKDVYFYLKDL 1029


>SPAPB24D3.08c |||NADP-dependent oxidoreductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 349

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = -2

Query: 560 AKLIKVTLDSYKNGLRKMFI 501
           AK++K TLD YK G+  +F+
Sbjct: 87  AKVVKSTLDQYKPGMDVVFV 106


>SPAC4F8.15 |itr1|SPAC7D4.01|myo-inositol transporter
           Itr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 575

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -1

Query: 423 SNSKMNIHRSYSFTSTLEFDCVSKWEYPLA 334
           SNS +++   ++   T+E   VSKW + LA
Sbjct: 62  SNSNISLSEPHALNDTVEDQPVSKWVWVLA 91


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,396,978
Number of Sequences: 5004
Number of extensions: 43325
Number of successful extensions: 108
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)