Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30815
         (690 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13369| Best HMM Match : UPF0005 (HMM E-Value=0.3)                   33   0.17 
SB_25564| Best HMM Match : RVT_1 (HMM E-Value=0.049)                   29   3.6  
SB_26491| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.2  

>SB_13369| Best HMM Match : UPF0005 (HMM E-Value=0.3)
          Length = 509

 Score = 33.5 bits (73), Expect = 0.17
 Identities = 21/74 (28%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
 Frame = +3

Query: 144 PIHIIYVYVFTAFTTAFSSVNVKKSLELIKACIDSAECL-LVVVSLTNVQYDSFFTHKCV 320
           PI I+++ +FT     FS + V      + A + S   + LV+ ++T + +   F H  V
Sbjct: 104 PIIIVHLVIFTVAALVFSIIIVHLVNFTVTALVFSIIIIHLVIFTVTALVFSIIFVHVVV 163

Query: 321 EFRTSLVGTPTLIH 362
            F T+LV    ++H
Sbjct: 164 VFITALVFPIIIVH 177


>SB_25564| Best HMM Match : RVT_1 (HMM E-Value=0.049)
          Length = 588

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 24/90 (26%), Positives = 40/90 (44%), Gaps = 3/90 (3%)
 Frame = -3

Query: 496 ELDLSIHYNVRKDLENYLRDL*SVEQQQNEHTSKLLFHIYFRIRLCIKVGVP---TSDVL 326
           E++  + +++    E Y R +  +E QQNE     L  +YF++R  + V       S   
Sbjct: 495 EMEFILAFSLGVAREVYARTIPVMEGQQNEAHYHYLSEVYFQLRRTLAVVCEKEIASIYF 554

Query: 325 NSTHLWVKNESY*TLVSDTTTNKHSAESIQ 236
            ST  ++K E Y  L       +H+  S Q
Sbjct: 555 ISTAEFIKPEPYDHLSHPIKNPRHTFNSSQ 584


>SB_26491| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 99

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 14/59 (23%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
 Frame = +3

Query: 189 AFSSVNVKKSLELIKACIDSAEC-LLVVVSLTNVQYDSFFTHKCVEFRTSLVGTPTLIH 362
           A + + VK  + ++  C++  EC +++V++  NV++D      C+     +V   T I+
Sbjct: 2   AITCIRVKCDVVMVITCVN-VECDVVMVITCINVEWDVVMVITCINVECDVVMVITCIN 59


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,854,776
Number of Sequences: 59808
Number of extensions: 279179
Number of successful extensions: 588
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 549
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 585
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1793485733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)