Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30813
         (583 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_5032| Best HMM Match : COX1 (HMM E-Value=8.3e-10)                  146   1e-35
SB_20687| Best HMM Match : No HMM Matches (HMM E-Value=.)              72   4e-13
SB_57614| Best HMM Match : No HMM Matches (HMM E-Value=.)              38   0.005
SB_50221| Best HMM Match : No HMM Matches (HMM E-Value=.)              38   0.005
SB_39830| Best HMM Match : No HMM Matches (HMM E-Value=.)              38   0.005
SB_15102| Best HMM Match : No HMM Matches (HMM E-Value=.)              38   0.005
SB_3498| Best HMM Match : No HMM Matches (HMM E-Value=.)               38   0.005
SB_5733| Best HMM Match : No HMM Matches (HMM E-Value=.)               36   0.018
SB_27609| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.6  
SB_13289| Best HMM Match : DUF543 (HMM E-Value=10)                     28   6.4  
SB_43698| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.5  

>SB_5032| Best HMM Match : COX1 (HMM E-Value=8.3e-10)
          Length = 229

 Score =  146 bits (354), Expect = 1e-35
 Identities = 83/189 (43%), Positives = 103/189 (54%), Gaps = 4/189 (2%)
 Frame = -3

Query: 581 IHGTQINYNPNIL*RLGFVFLFTVGGLTGVILANSSIDITLHDTYYVVAHFHYVLSXXXX 402
           ++G  I  +  +L  +GFVFLFT+GGLTGVILANSS+D+ +HDTYYVVAHFHYVLS    
Sbjct: 31  LYGGAIRLDTPMLWAIGFVFLFTIGGLTGVILANSSLDVVMHDTYYVVAHFHYVLSMGAV 90

Query: 401 XXXXXXXIN*YPLFTGLSLNSYILKIQFFTIFIGVNITFFPQHFLGLAGIPRRYSDYPDX 222
                     +   TG   N    KI F+ +FIGVNITFFPQHFLGLAG PRRYSD+ D 
Sbjct: 91  FAIFAGFYFWFGKITGYCYNELYGKIHFWIMFIGVNITFFPQHFLGLAGFPRRYSDFADG 150

Query: 221 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXINQ-RINLFSLNLPS---SIE*YQNLPPAE 54
                                         + + +   +  N  S   S+E  Q  PPA 
Sbjct: 151 YAGWNLVCSFGSTISVVGVVWFIFVVYDAYVREVKFIGWVENTGSSWPSLEWVQQSPPAL 210

Query: 53  HSYNELPIL 27
           H+YNELP +
Sbjct: 211 HTYNELPFV 219


>SB_20687| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 143

 Score = 71.7 bits (168), Expect = 4e-13
 Identities = 45/115 (39%), Positives = 55/115 (47%), Gaps = 4/115 (3%)
 Frame = -3

Query: 359 TGLSLNSYILKIQFFTIFIGVNITFFPQHFLGLAGIPRRYSDYPDXXXXXXXXXXXXXXX 180
           TG   N    KI F+ +FIGVNITFFPQHFLGLAG PRRYSD+ D               
Sbjct: 19  TGYCYNELYGKIHFWIMFIGVNITFFPQHFLGLAGFPRRYSDFADGYAGWNLVCSFGSTI 78

Query: 179 XXXXXXXXXXXXXXXXINQ-RINLFSLNLPS---SIE*YQNLPPAEHSYNELPIL 27
                           + + +   +  N  S   S+E  Q  PPA H+YNELP +
Sbjct: 79  SVVGVVWFIFVVYDAYVREVKFIGWVENTGSSWPSLEWVQQSPPALHTYNELPFV 133


>SB_57614| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 95

 Score = 38.3 bits (85), Expect = 0.005
 Identities = 28/87 (32%), Positives = 36/87 (41%), Gaps = 4/87 (4%)
 Frame = -3

Query: 275 HFLGLAGIPRRYSDYPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXINQ-RINLFSLN 99
           HFLGLAG PRRYSD+ D                               + + +   +  N
Sbjct: 1   HFLGLAGFPRRYSDFADGYAGWNLVCSFGSTISVVGVVWFIFVVYDAYVREVKFIGWVEN 60

Query: 98  LPS---SIE*YQNLPPAEHSYNELPIL 27
             S   S+E  Q  PPA H+YNELP +
Sbjct: 61  TGSSWPSLEWVQQSPPALHTYNELPFV 87


>SB_50221| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 95

 Score = 38.3 bits (85), Expect = 0.005
 Identities = 28/87 (32%), Positives = 36/87 (41%), Gaps = 4/87 (4%)
 Frame = -3

Query: 275 HFLGLAGIPRRYSDYPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXINQ-RINLFSLN 99
           HFLGLAG PRRYSD+ D                               + + +   +  N
Sbjct: 1   HFLGLAGFPRRYSDFADGYAGWNLVCSFGSTISVVGVVWFIFVVYDAYVREVKFIGWVEN 60

Query: 98  LPS---SIE*YQNLPPAEHSYNELPIL 27
             S   S+E  Q  PPA H+YNELP +
Sbjct: 61  TGSSWPSLEWVQQSPPALHTYNELPFV 87


>SB_39830| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 95

 Score = 38.3 bits (85), Expect = 0.005
 Identities = 28/87 (32%), Positives = 36/87 (41%), Gaps = 4/87 (4%)
 Frame = -3

Query: 275 HFLGLAGIPRRYSDYPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXINQ-RINLFSLN 99
           HFLGLAG PRRYSD+ D                               + + +   +  N
Sbjct: 1   HFLGLAGFPRRYSDFADGYAGWNLVCSFGSTISVVGVVWFIFVVYDAYVREVKFIGWVEN 60

Query: 98  LPS---SIE*YQNLPPAEHSYNELPIL 27
             S   S+E  Q  PPA H+YNELP +
Sbjct: 61  TGSSWPSLEWVQQSPPALHTYNELPFV 87


>SB_15102| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 95

 Score = 38.3 bits (85), Expect = 0.005
 Identities = 28/87 (32%), Positives = 36/87 (41%), Gaps = 4/87 (4%)
 Frame = -3

Query: 275 HFLGLAGIPRRYSDYPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXINQ-RINLFSLN 99
           HFLGLAG PRRYSD+ D                               + + +   +  N
Sbjct: 1   HFLGLAGFPRRYSDFADGYAGWNLVCSFGSTISVVGVVWFIFVVYDAYVREVKFIGWVEN 60

Query: 98  LPS---SIE*YQNLPPAEHSYNELPIL 27
             S   S+E  Q  PPA H+YNELP +
Sbjct: 61  TGSSWPSLEWVQQSPPALHTYNELPFV 87


>SB_3498| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 95

 Score = 38.3 bits (85), Expect = 0.005
 Identities = 28/87 (32%), Positives = 36/87 (41%), Gaps = 4/87 (4%)
 Frame = -3

Query: 275 HFLGLAGIPRRYSDYPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXINQ-RINLFSLN 99
           HFLGLAG PRRYSD+ D                               + + +   +  N
Sbjct: 1   HFLGLAGFPRRYSDFADGYAGWNLVCSFGSTISVVGVVWFIFVVYDAYVREVKFIGWVEN 60

Query: 98  LPS---SIE*YQNLPPAEHSYNELPIL 27
             S   S+E  Q  PPA H+YNELP +
Sbjct: 61  TGSSWPSLEWVQQSPPALHTYNELPFV 87


>SB_5733| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 70

 Score = 36.3 bits (80), Expect = 0.018
 Identities = 14/17 (82%), Positives = 15/17 (88%)
 Frame = -3

Query: 275 HFLGLAGIPRRYSDYPD 225
           HFLGLAG PRRYSD+ D
Sbjct: 1   HFLGLAGFPRRYSDFAD 17


>SB_27609| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 707

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
 Frame = -2

Query: 372 ISFIYRPFIKFLYTKNSIFYNIYWSK--YNIFSTTFFRFSWNT 250
           + FIY   + FL +KN  F+  YW+   YN F        W T
Sbjct: 14  VGFIYVAKVVFLLSKNKSFFFEYWTPVVYNAFGQRSPNSRWRT 56


>SB_13289| Best HMM Match : DUF543 (HMM E-Value=10)
          Length = 319

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -1

Query: 100 ISHHQLNDIKIYHQQNIHIMNYQF 29
           I+HHQ + I I H Q+  I+NY +
Sbjct: 296 INHHQSSSIIINHHQSSSIINYYY 319


>SB_43698| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 342

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -3

Query: 296 NITFFPQHFLGLAGIPRRY 240
           +I F  +H+L + G+PRRY
Sbjct: 174 SIRFLVEHYLDIQGVPRRY 192


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,314,118
Number of Sequences: 59808
Number of extensions: 172107
Number of successful extensions: 306
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 275
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 305
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1397989795
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)