Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30812
         (760 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP35G2.11c |||transcription related zf-ZZ type zinc finger pro...    31   0.24 
SPBP4H10.18c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    28   1.7  
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb...    25   8.9  

>SPBP35G2.11c |||transcription related zf-ZZ type zinc finger
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 397

 Score = 30.7 bits (66), Expect = 0.24
 Identities = 16/56 (28%), Positives = 25/56 (44%)
 Frame = -1

Query: 559 HFTESQVLKQTSSVQRYPSPRLTSRTTACEFYVELMHNMCSYFYYYFLYSVCGFCF 392
           HFT+   LK         SP L S + AC   ++++ N   +    F + VC  C+
Sbjct: 34  HFTKENNLKSNIFEHNNNSPTLRSSSVACNTCLKIIRNDSFHCTKCFDFDVCRDCY 89


>SPBP4H10.18c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 314

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = -3

Query: 587 IGSSAHVEKPLHRITSFKTNFISPKISVS*TYIS 486
           I +S H  + + RIT F+  F++PK+  S T +S
Sbjct: 253 IETSIHDHRDISRITPFELPFVNPKLFASFTPMS 286


>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2685

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 13/59 (22%), Positives = 26/59 (44%)
 Frame = -1

Query: 559 HFTESQVLKQTSSVQRYPSPRLTSRTTACEFYVELMHNMCSYFYYYFLYSVCGFCFGSS 383
           +F  S +L+  +++ R+     T+       +  L+HN C     ++ Y  C   FG +
Sbjct: 697 NFIVSTILRDNTAISRF-----TTEINFLRCFASLLHNCC----IFYAYRACSSLFGEN 746


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,962,407
Number of Sequences: 5004
Number of extensions: 57539
Number of successful extensions: 141
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)