Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30812
         (760 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19614| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.1  
SB_12991| Best HMM Match : TP2 (HMM E-Value=1.4)                       25   3.9  
SB_50253| Best HMM Match : HYR (HMM E-Value=2.6e-20)                   28   9.5  
SB_15229| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.5  
SB_10840| Best HMM Match : DUF368 (HMM E-Value=4.5)                    28   9.5  

>SB_19614| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 603

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
 Frame = -1

Query: 616 ALHAFMFWFLLGPART*RSHFTESQVLKQTSSVQRYP-SPRLTSRTTACEFYVEL 455
           A+H  +  FLLG A   R+ F    V +Q + V R P S R     T C++ ++L
Sbjct: 5   AIHRLLVVFLLGLAFFARNSFGCGGVFEQETGVLRSPASGRNIGEITQCDYLLQL 59


>SB_12991| Best HMM Match : TP2 (HMM E-Value=1.4)
          Length = 296

 Score = 25.0 bits (52), Expect(2) = 3.9
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -1

Query: 490 SRTTACEFYVELMHNMCSYFYYYFLY 413
           SR  A ++Y    +    Y+YYY+ Y
Sbjct: 253 SRLLAMDYYYYYYYYYYYYYYYYYYY 278



 Score = 22.6 bits (46), Expect(2) = 3.9
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = -1

Query: 436 YFYYYFLYSVC 404
           Y+YYY+ Y  C
Sbjct: 285 YYYYYYYYYYC 295


>SB_50253| Best HMM Match : HYR (HMM E-Value=2.6e-20)
          Length = 525

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -1

Query: 739 YIGARNYCFNVMPATPMASTLCILC 665
           Y GA+NYC +    T  +   C+LC
Sbjct: 244 YFGAKNYCADCPTGTKSSGGDCVLC 268


>SB_15229| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 143

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 16/62 (25%), Positives = 30/62 (48%), Gaps = 5/62 (8%)
 Frame = -3

Query: 674 HIMLFGLKNNFNKIKT----FTSCLACIYVLVSIGSSAHVEKPLHRITSFKTNFIS-PKI 510
           H +LF L++ FN + +     T C+ C  ++  +    H     H + + +  FI+ P +
Sbjct: 79  HHLLFALRDAFNSVSSSTVCITGCIQCRVIIYYVHYGMHSMACHHLLCALRDAFINVPIL 138

Query: 509 SV 504
           SV
Sbjct: 139 SV 140


>SB_10840| Best HMM Match : DUF368 (HMM E-Value=4.5)
          Length = 331

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 16/62 (25%), Positives = 30/62 (48%), Gaps = 5/62 (8%)
 Frame = -3

Query: 674 HIMLFGLKNNFNKIKT----FTSCLACIYVLVSIGSSAHVEKPLHRITSFKTNFIS-PKI 510
           H +LF L++ FN + +     T C+ C  ++  +    H     H + + +  FI+ P +
Sbjct: 79  HHLLFALRDAFNSVSSSTVCITGCIQCRVIIYYVHYGMHSMACHHLLCALRDAFINVPIL 138

Query: 509 SV 504
           SV
Sbjct: 139 SV 140


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,126,486
Number of Sequences: 59808
Number of extensions: 423336
Number of successful extensions: 875
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 807
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 871
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2070332524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)