Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30811
(431 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0 |Schizosacch... 136 1e-33
SPBC11G11.03 |||60S acidic ribosomal protein |Schizosaccharomyce... 54 1e-08
SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1 |Schizosacch... 29 0.31
SPAC823.13c |||mitochondrial inner membrane protein|Schizosaccha... 27 0.93
SPAC3H1.04c |mdm31||mitochondrial inner membrane protein Mdm31|S... 27 0.93
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 27 1.6
SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch... 26 2.2
SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomy... 25 3.8
SPAC186.08c |||L-lactate dehydrogenase |Schizosaccharomyces pomb... 25 3.8
SPAC23D3.10c |eng2||endo-1,3-beta-glucanase Eng2|Schizosaccharom... 24 8.7
SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|c... 24 8.7
SPAC2F7.03c |pom1||DYRK family protein kinase Pom1|Schizosacchar... 24 8.7
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 24 8.7
SPBC14C8.15 |||triglyceride lipase-cholesterol esterase |Schizos... 24 8.7
>SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 312
Score = 136 bits (330), Expect = 1e-33
Identities = 62/119 (52%), Positives = 87/119 (73%)
Frame = +1
Query: 73 KSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTMMRKAIKDHL 252
K+ YF K+ L ++Y F+V DNV SQQM +R LRG++ ++MGKNTM+R+A++ +
Sbjct: 8 KAQYFEKLRSLFEKYNSLFVVNIDNVSSQQMHTVRKQLRGTAELIMGKNTMIRRAMRGII 67
Query: 253 DNNPALEKLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQAPARPGAIAPLSVVIPAHNT 429
++ P LE+LLP ++GNVGFVFT DL EVR+ ++ N + APARP AIAPL V +PA NT
Sbjct: 68 NDMPELERLLPVVRGNVGFVFTNADLKEVRETIIANVIAAPARPNAIAPLDVFVPAGNT 126
>SPBC11G11.03 |||60S acidic ribosomal protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 241
Score = 53.6 bits (123), Expect = 1e-08
Identities = 49/143 (34%), Positives = 72/143 (50%), Gaps = 6/143 (4%)
Frame = +1
Query: 10 KFHRSPYATLSRMGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLR 189
K RS TL++ ++ K+ F + Q LD + +I N+ + +++IR +
Sbjct: 3 KSRRSKVLTLAQTEKKGHEG-KAALFSGVQQSLDSFDYMWIFDVTNMRNTYLKRIRDDWK 61
Query: 190 GSSIVLMGKNTMMRKAI-----KDHLDNNPALEKLLPHIKGNVGFVFTRGDLVEVRDKLL 354
GS I MGK +M KA+ ++H +N L KLL G VG +FT EV
Sbjct: 62 GSRI-FMGKTKVMAKALGHTPEEEHAENVSKLTKLL---HGAVGLLFTNSKPDEVIG-YF 116
Query: 355 ENKVQAP-ARPGAIAPLSVVIPA 420
E+ VQ AR GA+AP + VIPA
Sbjct: 117 ESFVQNDFARAGAVAPFTHVIPA 139
>SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 297
Score = 29.1 bits (62), Expect = 0.31
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = +2
Query: 203 CSWEKTL*CAKPSKTTWTTIQPSRNCCHTSRATLAS 310
CS EKT C++ K+ T+ +PS CC ++T+ +
Sbjct: 264 CSTEKTSCCSQEKKSCCTSEKPS--CCSNGKSTVCA 297
>SPAC823.13c |||mitochondrial inner membrane
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 317
Score = 27.5 bits (58), Expect = 0.93
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -1
Query: 269 RAGLLSRWSLMALRIIVFFPMSTILEPR 186
+A W LM + +++F + ILEPR
Sbjct: 162 QASTWGTWGLMGINVVLFVVVQLILEPR 189
>SPAC3H1.04c |mdm31||mitochondrial inner membrane protein
Mdm31|Schizosaccharomyces pombe|chr 1|||Manual
Length = 601
Score = 27.5 bits (58), Expect = 0.93
Identities = 13/42 (30%), Positives = 24/42 (57%)
Frame = -1
Query: 347 LSRTSTRSPRVNTKPTLPLMCGNSFSRAGLLSRWSLMALRII 222
L +T +S + PTLP + + S +G+LSR + + ++ I
Sbjct: 35 LKQTVLQSSSFKSFPTLPRLAARNISNSGILSRTTPVIIKQI 76
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 26.6 bits (56), Expect = 1.6
Identities = 25/97 (25%), Positives = 42/97 (43%)
Frame = +2
Query: 140 PITWARNRCSRSVSRYVAPVSCSWEKTL*CAKPSKTTWTTIQPSRNCCHTSRATLASCSP 319
P+T S SV PV+ S T+ + P +T T + NC TS + L + +P
Sbjct: 490 PLTTTNCTTSTSVPYTSTPVTSS-NYTISSSTPVTSTPVT---TTNCT-TSTSVLYTSTP 544
Query: 320 AETSLRSVTNCWRTKSRLQLVPVPLPHCQSSFPPTTP 430
++ + TNC T + + P+ + +TP
Sbjct: 545 VTSTPLATTNC-TTSTSVPYTSTPVTSSNYTISSSTP 580
>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1822
Score = 26.2 bits (55), Expect = 2.2
Identities = 16/54 (29%), Positives = 26/54 (48%)
Frame = -1
Query: 362 LFSNSLSRTSTRSPRVNTKPTLPLMCGNSFSRAGLLSRWSLMALRIIVFFPMST 201
LFSN + R + R+ T L+ GN++ + W+L+A I F +T
Sbjct: 1512 LFSNCICRDNITLSRIGTNCMQQLLSGNAYRFE--VKDWNLVADMFIELFKETT 1563
>SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 421
Score = 25.4 bits (53), Expect = 3.8
Identities = 21/61 (34%), Positives = 27/61 (44%), Gaps = 3/61 (4%)
Frame = -1
Query: 431 PVLWAGMTTDNGAMAPGRAGAWTLFSNSLSRTSTRSPR---VNTKPTLPLMCGNSFSRAG 261
PV + + G++ P AGAW L N L T + +NT P PL G FS
Sbjct: 142 PVYVPIIPPEEGSVKPVSAGAWKLDMNKLRNAITEKTKMIVINT-PHNPL--GKIFSEEE 198
Query: 260 L 258
L
Sbjct: 199 L 199
>SPAC186.08c |||L-lactate dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 330
Score = 25.4 bits (53), Expect = 3.8
Identities = 18/49 (36%), Positives = 26/49 (53%)
Frame = +1
Query: 121 KCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTMMRKAIKDHLDNNPA 267
K IVGA NVGS + +S + IV++ N +KA + +D N A
Sbjct: 22 KIVIVGAGNVGSTTAFTLLLSGLAAEIVIIDLN--KKKAEGEAMDLNHA 68
>SPAC23D3.10c |eng2||endo-1,3-beta-glucanase
Eng2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 706
Score = 24.2 bits (50), Expect = 8.7
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = -1
Query: 122 FGYSSKSWMILTK*LDFQVALSSLP 48
F Y++K+W ++ K L QV +P
Sbjct: 317 FAYATKTWHLIEKNLPTQVGFLPIP 341
>SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 796
Score = 24.2 bits (50), Expect = 8.7
Identities = 7/21 (33%), Positives = 11/21 (52%)
Frame = -3
Query: 303 NVALDVWQQFLEGWIVVQVVF 241
N + W +F +GW + V F
Sbjct: 431 NTYIGRWHKFFQGWFITLVTF 451
>SPAC2F7.03c |pom1||DYRK family protein kinase
Pom1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1087
Score = 24.2 bits (50), Expect = 8.7
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = -1
Query: 428 VLWAGMTTDNGAMAPGRAGAWTLFSNSLSRTSTRSPRVNTKPTLP 294
V +G + +MAP R+G+W +N S + R+ + K +P
Sbjct: 226 VFSSGNHAYHASMAPKRSGSWR-HTNFHSTSHPRAASIGNKSGIP 269
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 24.2 bits (50), Expect = 8.7
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = -3
Query: 114 LVQELDDLNEVVRLPSSLVLPTHPG 40
L QE+ L +RLP+ L P++ G
Sbjct: 931 LTQEITQLGSNMRLPTKLTRPSNDG 955
>SPBC14C8.15 |||triglyceride lipase-cholesterol esterase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 24.2 bits (50), Expect = 8.7
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = -3
Query: 366 DFVLQQFVTDLNEVSAGEH 310
D V+QQ V LN V AG++
Sbjct: 419 DIVIQQVVEQLNHVIAGDY 437
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,025,058
Number of Sequences: 5004
Number of extensions: 40122
Number of successful extensions: 125
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 154067960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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