Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30811
(431 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_15432| Best HMM Match : Ribosomal_L10 (HMM E-Value=3.1e-37) 165 1e-41
SB_36524| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.025
SB_47216| Best HMM Match : Oxidored_molyb (HMM E-Value=0) 29 1.6
SB_27584| Best HMM Match : F5_F8_type_C (HMM E-Value=0) 29 1.6
SB_10357| Best HMM Match : zf-C2H2 (HMM E-Value=9.8e-38) 28 2.8
SB_11480| Best HMM Match : LCCL (HMM E-Value=7.5) 27 5.0
SB_44647| Best HMM Match : C_tripleX (HMM E-Value=0.00011) 27 5.0
SB_26098| Best HMM Match : Smg4_UPF3 (HMM E-Value=1.6) 27 5.0
SB_11301| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.6
SB_13369| Best HMM Match : UPF0005 (HMM E-Value=0.3) 27 6.6
SB_55414| Best HMM Match : 7tm_1 (HMM E-Value=4.3e-08) 27 8.7
SB_6695| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.7
SB_47946| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.7
SB_36095| Best HMM Match : DMP1 (HMM E-Value=3.2) 27 8.7
SB_23441| Best HMM Match : IncA (HMM E-Value=2.5) 27 8.7
>SB_15432| Best HMM Match : Ribosomal_L10 (HMM E-Value=3.1e-37)
Length = 261
Score = 165 bits (402), Expect = 1e-41
Identities = 77/110 (70%), Positives = 90/110 (81%)
Frame = +1
Query: 100 QLLDEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTMMRKAIKDHLDNNPALEKL 279
Q LDEYPK F+VG DNVGS+QMQ IR SLRG VLMGKNTM+RKAI+ HL+NNP LEKL
Sbjct: 1 QYLDEYPKLFLVGVDNVGSKQMQTIRQSLRGQGEVLMGKNTMIRKAIRGHLENNPDLEKL 60
Query: 280 LPHIKGNVGFVFTRGDLVEVRDKLLENKVQAPARPGAIAPLSVVIPAHNT 429
LPHIKGN+GFVFT+ DL +VR ++ENKV APA+ G IAP+ V +PA NT
Sbjct: 61 LPHIKGNIGFVFTKEDLADVRKIIMENKVAAPAKAGVIAPIDVFVPAGNT 110
>SB_36524| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 214
Score = 35.1 bits (77), Expect = 0.025
Identities = 18/39 (46%), Positives = 25/39 (64%)
Frame = +1
Query: 214 KNTMMRKAIKDHLDNNPALEKLLPHIKGNVGFVFTRGDL 330
K T++RK +K HLDN P L K LP + G + + + GDL
Sbjct: 168 KVTIVRKELKSHLDNLPDLSK-LPDVDGGLAPLPSAGDL 205
>SB_47216| Best HMM Match : Oxidored_molyb (HMM E-Value=0)
Length = 672
Score = 29.1 bits (62), Expect = 1.6
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -1
Query: 422 WAGMTTDNGAMAPGRAGAWTLFSNSL 345
W+ T D PGRA AW+L+S +L
Sbjct: 594 WSIATLDGKDQPPGRAWAWSLWSTTL 619
>SB_27584| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
Length = 7381
Score = 29.1 bits (62), Expect = 1.6
Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = +3
Query: 114 VPKMFHRGCR*RGLATDAADPYLAT-WLQYRAHGKKHYDA 230
VPKMFH RG+ T+A P + T +L+ R G++ +A
Sbjct: 3856 VPKMFHGNRDNRGIKTNAIFPTIITRYLRIRPMGRRGLNA 3895
>SB_10357| Best HMM Match : zf-C2H2 (HMM E-Value=9.8e-38)
Length = 509
Score = 28.3 bits (60), Expect = 2.8
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = -1
Query: 359 FSNSLSRTSTRSPRVNTKPTLPLMCGNSFSRAGLLSR 249
FS+S + T KP +CG SFS++G LSR
Sbjct: 464 FSDSSTLTKRLRTHTGEKPYQCRICGMSFSQSGNLSR 500
>SB_11480| Best HMM Match : LCCL (HMM E-Value=7.5)
Length = 152
Score = 27.5 bits (58), Expect = 5.0
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +1
Query: 169 QIRISLRGSSIVLMGKNTMMRKAIKDHLDNNP 264
Q+R L S +L+G NT+++ A+ D L P
Sbjct: 23 QVRPGLTALSTILLGANTVIQAALPDILAKTP 54
>SB_44647| Best HMM Match : C_tripleX (HMM E-Value=0.00011)
Length = 812
Score = 27.5 bits (58), Expect = 5.0
Identities = 19/97 (19%), Positives = 37/97 (38%), Gaps = 1/97 (1%)
Frame = +2
Query: 131 SWVPITWARNRCSRSVSRYVAPVSCSWEKTL*C-AKPSKTTWTTIQPSRNCCHTSRATLA 307
S VP+T + + + P + + + T KP + + CC+ +A A
Sbjct: 580 SSVPLTQFQAQLQQQQPAQATPTNAATQDTDSAPCKPICLKFCVTLCPQKCCNKGKAAAA 639
Query: 308 SCSPAETSLRSVTNCWRTKSRLQLVPVPLPHCQSSFP 418
+ +P + + T T++ + P P C P
Sbjct: 640 AAAPTKPPTAAPTTAAATQAAPAAMTCPQPACAPQSP 676
>SB_26098| Best HMM Match : Smg4_UPF3 (HMM E-Value=1.6)
Length = 342
Score = 27.5 bits (58), Expect = 5.0
Identities = 15/35 (42%), Positives = 18/35 (51%)
Frame = +2
Query: 245 TTWTTIQPSRNCCHTSRATLASCSPAETSLRSVTN 349
TTWT ++ S R LA CS TS R+ TN
Sbjct: 67 TTWTALRGSTTSYRRRRTFLAPCS-INTSQRTSTN 100
>SB_11301| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 385
Score = 27.1 bits (57), Expect = 6.6
Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 8/72 (11%)
Frame = +2
Query: 239 SKTTWTTIQPSRNCCHTSRATLASC---SPAETSLRSVTNCWRTKSR----LQLVPVPL- 394
++++ T +R+ CHT +T +SC P + L T C S LQ V V
Sbjct: 132 ARSSCHTTHSARSSCHTKHSTRSSCHTTQPCKKQLSHNTPCTEKLSHNTLPLQRVAVTQH 191
Query: 395 PHCQSSFPPTTP 430
H +SS T P
Sbjct: 192 NHAKSSCDTTEP 203
>SB_13369| Best HMM Match : UPF0005 (HMM E-Value=0.3)
Length = 509
Score = 27.1 bits (57), Expect = 6.6
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = +3
Query: 366 PGSSSSRCHCPIVSRHSRPQHR 431
P S CH P +S+H RP R
Sbjct: 468 PSSRHHHCHRPRLSKHHRPSRR 489
>SB_55414| Best HMM Match : 7tm_1 (HMM E-Value=4.3e-08)
Length = 595
Score = 26.6 bits (56), Expect = 8.7
Identities = 9/27 (33%), Positives = 13/27 (48%)
Frame = +2
Query: 242 KTTWTTIQPSRNCCHTSRATLASCSPA 322
++ WT P C H ++ A C PA
Sbjct: 18 ESNWTRCSPVCKCAHIDKSMAAVCRPA 44
>SB_6695| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 333
Score = 26.6 bits (56), Expect = 8.7
Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 3/59 (5%)
Frame = +3
Query: 99 PTLGRVPKMFHRGCR*RGLATDAADPYLATWLQYRAH---GKKHYDAQSHQRPPGQQSS 266
P R+ KMF G + RG++ D + T H KK QS Q+ G +SS
Sbjct: 154 PDYSRLRKMFQNGLKKRGVSDDGRSVHF-TSPPANGHDDDSKKKKTVQSKQKAKGTKSS 211
>SB_47946| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 460
Score = 26.6 bits (56), Expect = 8.7
Identities = 11/41 (26%), Positives = 23/41 (56%)
Frame = -3
Query: 315 EHEANVALDVWQQFLEGWIVVQVVFDGFAHHSVFSHEHDTG 193
+H+ N+ LDV ++ L ++V +VV + + + H +G
Sbjct: 152 QHDPNIELDVMRKELMDYVVKEVVPEKYIDNDTVYHMQPSG 192
>SB_36095| Best HMM Match : DMP1 (HMM E-Value=3.2)
Length = 939
Score = 26.6 bits (56), Expect = 8.7
Identities = 15/34 (44%), Positives = 18/34 (52%)
Frame = -1
Query: 353 NSLSRTSTRSPRVNTKPTLPLMCGNSFSRAGLLS 252
NS + R PR TKP L NS S++G LS
Sbjct: 53 NSPTTVEERQPRDETKPLLYQHRNNSASKSGELS 86
>SB_23441| Best HMM Match : IncA (HMM E-Value=2.5)
Length = 927
Score = 26.6 bits (56), Expect = 8.7
Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Frame = +1
Query: 169 QIRISLRGSSIVLMGKNTMMRKAIKDHLDNNPA--LEKLLPHIKGNVGFVFTRGD 327
Q I RG++ +++ K T + + + + L N+ L K IKGN FVF+ GD
Sbjct: 438 QSGIMRRGTNKLVI-KYTNIERCLFNKLKNDLGHFLPKYKGFIKGNFSFVFSTGD 491
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,910,064
Number of Sequences: 59808
Number of extensions: 343935
Number of successful extensions: 1090
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 973
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1089
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 822495283
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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