Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30811
(431 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z79754-9|CAB02098.1| 312|Caenorhabditis elegans Hypothetical pr... 183 6e-47
U41264-4|AAA82424.1| 220|Caenorhabditis elegans Hypothetical pr... 48 4e-06
Z82286-2|CAB05306.1| 397|Caenorhabditis elegans Hypothetical pr... 31 0.27
Z81117-4|CAB03319.1| 249|Caenorhabditis elegans Hypothetical pr... 28 2.5
U53154-2|AAC25856.1| 358|Caenorhabditis elegans Hypothetical pr... 28 2.5
AC006770-2|AAF60593.1| 1145|Caenorhabditis elegans Hypothetical ... 28 2.5
Z81522-2|CAB04238.1| 415|Caenorhabditis elegans Hypothetical pr... 27 4.4
X70833-1|CAA50181.1| 575|Caenorhabditis elegans Cytoplasmic int... 27 5.8
U29379-3|AAF99979.3| 558|Caenorhabditis elegans Intermediate fi... 27 5.8
Z84574-5|CAB06541.1| 846|Caenorhabditis elegans Hypothetical pr... 27 7.7
U80441-1|AAB37651.1| 647|Caenorhabditis elegans Hypothetical pr... 27 7.7
>Z79754-9|CAB02098.1| 312|Caenorhabditis elegans Hypothetical
protein F25H2.10 protein.
Length = 312
Score = 183 bits (445), Expect = 6e-47
Identities = 81/128 (63%), Positives = 104/128 (81%)
Frame = +1
Query: 46 MGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTM 225
M RED++TWK+NYF K+++L +EYPKC +VG DNVGS+QMQ+IR ++RG + +LMGKNTM
Sbjct: 1 MVREDRSTWKANYFTKLVELFEEYPKCLLVGVDNVGSKQMQEIRQAMRGHAEILMGKNTM 60
Query: 226 MRKAIKDHLDNNPALEKLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQAPARPGAIAPLS 405
+RKA++ HL NP+LEKLLPHI NVGFVFT+ DL E+R KLLEN+ APA+ GAIAP
Sbjct: 61 IRKALRGHLGKNPSLEKLLPHIVENVGFVFTKEDLGEIRSKLLENRKGAPAKAGAIAPCD 120
Query: 406 VVIPAHNT 429
V +P NT
Sbjct: 121 VKLPPQNT 128
>U41264-4|AAA82424.1| 220|Caenorhabditis elegans Hypothetical
protein F10E7.5 protein.
Length = 220
Score = 47.6 bits (108), Expect = 4e-06
Identities = 37/135 (27%), Positives = 63/135 (46%), Gaps = 2/135 (1%)
Frame = +1
Query: 19 RSPYATLSRMGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSS 198
R +L+++ ++ K T K+N ++ +D+Y FI N+ S + IR + +S
Sbjct: 6 RDKNVSLTKVKKKTKDT-KNNLVNEVRASVDQYKNLFIFTIANMRSTRFIAIRQKYKENS 64
Query: 199 IVLMGKNTMMRKAIKDHLDNNPA--LEKLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQA 372
GKN ++ A+ + A L K +KG G +FT EV + E +
Sbjct: 65 RFFFGKNNVISIALGKQKSDEYANQLHKASAILKGQCGLMFTNMSKKEVEAEFSEASEED 124
Query: 373 PARPGAIAPLSVVIP 417
AR G +A +VV+P
Sbjct: 125 YARVGDVATETVVLP 139
>Z82286-2|CAB05306.1| 397|Caenorhabditis elegans Hypothetical
protein W02A2.3 protein.
Length = 397
Score = 31.5 bits (68), Expect = 0.27
Identities = 20/74 (27%), Positives = 30/74 (40%), Gaps = 2/74 (2%)
Frame = +2
Query: 203 CSWEKTL*CAKP-SKTTWTTIQPSRNCCHTSRATLASCSPAET-SLRSVTNCWRTKSRLQ 376
CSW P S+T + QP+ N R C+P ++S W T S+
Sbjct: 273 CSWMIDPLATDPQSRTHYLQCQPAPNNLFCGRWQRMPCAPGTVFDVQSQVCVWDTNSQPG 332
Query: 377 LVPVPLPHCQSSFP 418
+P P P+ + P
Sbjct: 333 TLPTPAPYVSTQAP 346
>Z81117-4|CAB03319.1| 249|Caenorhabditis elegans Hypothetical
protein T06E6.10 protein.
Length = 249
Score = 28.3 bits (60), Expect = 2.5
Identities = 13/56 (23%), Positives = 21/56 (37%)
Frame = +2
Query: 194 PVSCSWEKTL*CAKPSKTTWTTIQPSRNCCHTSRATLASCSPAETSLRSVTNCWRT 361
P C+ + C T ++P+ C H + T CSP + C+ T
Sbjct: 109 PAGCAMVRPSGCMDSPTMTGCELKPT--CIHVNACTTTKCSPGKKCALHTVQCFTT 162
>U53154-2|AAC25856.1| 358|Caenorhabditis elegans Hypothetical
protein C33G8.12 protein.
Length = 358
Score = 28.3 bits (60), Expect = 2.5
Identities = 15/38 (39%), Positives = 25/38 (65%)
Frame = +1
Query: 1 LVLKFHRSPYATLSRMGREDKATWKSNYFVKIIQLLDE 114
L+ K S ++ +SR+ +EDK + SN+++K QLL E
Sbjct: 156 LLWKLGESIFSDVSRLSKEDKNSMISNFYIK-WQLLME 192
>AC006770-2|AAF60593.1| 1145|Caenorhabditis elegans Hypothetical
protein Y46B2A.3 protein.
Length = 1145
Score = 28.3 bits (60), Expect = 2.5
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = -1
Query: 410 TTDNGAMAPGRAGAWTLFSNSLSRTSTRSPRVNTKPT 300
TT P AG WT+ +N ++R TR P +PT
Sbjct: 192 TTRGFTQRPTAAG-WTIRANGITRGQTRVPGTTREPT 227
>Z81522-2|CAB04238.1| 415|Caenorhabditis elegans Hypothetical
protein F32B4.1 protein.
Length = 415
Score = 27.5 bits (58), Expect = 4.4
Identities = 16/50 (32%), Positives = 24/50 (48%)
Frame = -3
Query: 360 VLQQFVTDLNEVSAGEHEANVALDVWQQFLEGWIVVQVVFDGFAHHSVFS 211
+L DL E S HE+ LDVW++ L Q + G++ H + S
Sbjct: 239 LLSSSARDLRE-SREPHESGWNLDVWKRNLNECRKGQYLLHGYSGHGILS 287
>X70833-1|CAA50181.1| 575|Caenorhabditis elegans Cytoplasmic
intermediate filament(IF) protein protein.
Length = 575
Score = 27.1 bits (57), Expect = 5.8
Identities = 20/79 (25%), Positives = 40/79 (50%), Gaps = 3/79 (3%)
Frame = +1
Query: 19 RSPYATLSRMGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISL---R 189
RS Y +S R D +W Y +K+ ++ + + + N ++++++R +L R
Sbjct: 285 RSEYDHVSNTTRTDIESW---YKLKVQEIHTQNSRNCL--EQNYAREEVKRLRTTLGDMR 339
Query: 190 GSSIVLMGKNTMMRKAIKD 246
G L G+N ++ K I+D
Sbjct: 340 GKMADLEGRNLLLEKQIED 358
>U29379-3|AAF99979.3| 558|Caenorhabditis elegans Intermediate
filament, a protein 4 protein.
Length = 558
Score = 27.1 bits (57), Expect = 5.8
Identities = 20/79 (25%), Positives = 40/79 (50%), Gaps = 3/79 (3%)
Frame = +1
Query: 19 RSPYATLSRMGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISL---R 189
RS Y +S R D +W Y +K+ ++ + + + N ++++++R +L R
Sbjct: 268 RSEYDHVSNTTRTDIESW---YKLKVQEIHTQNSRNCL--EQNYAREEVKRLRTTLGDMR 322
Query: 190 GSSIVLMGKNTMMRKAIKD 246
G L G+N ++ K I+D
Sbjct: 323 GKMADLEGRNLLLEKQIED 341
>Z84574-5|CAB06541.1| 846|Caenorhabditis elegans Hypothetical
protein F33E2.6 protein.
Length = 846
Score = 26.6 bits (56), Expect = 7.7
Identities = 15/62 (24%), Positives = 25/62 (40%)
Frame = +2
Query: 233 KPSKTTWTTIQPSRNCCHTSRATLASCSPAETSLRSVTNCWRTKSRLQLVPVPLPHCQSS 412
+P KT +P + + T P T ++ CW+ +SRL P P ++
Sbjct: 396 EPPKTEPPPTEPPKT--EPPKTTPPKTEPPTTEPPNIPYCWQQQSRLFAPSPPPPRVNNT 453
Query: 413 FP 418
P
Sbjct: 454 MP 455
>U80441-1|AAB37651.1| 647|Caenorhabditis elegans Hypothetical
protein F27C1.6 protein.
Length = 647
Score = 26.6 bits (56), Expect = 7.7
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = +1
Query: 160 QMQQIRISLRGSSIVLMGKNTMMRKAIKDHLDNNPALEKLL 282
+M RI RGS + G+N ++ ++ H NP ++KLL
Sbjct: 240 EMDLQRIMERGS-LKHRGQNQKFKQMLEKHASRNPEVKKLL 279
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,367,964
Number of Sequences: 27780
Number of extensions: 239922
Number of successful extensions: 872
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 826
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 871
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 724655464
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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