Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30810
         (656 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr 1||...    28   1.4  
SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit |Sch...    26   5.5  
SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa...    26   5.5  
SPAC7D4.10 |vma13||V-type ATPase subunit H|Schizosaccharomyces p...    25   7.3  
SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual    25   9.6  

>SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1116

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
 Frame = +1

Query: 367 ACNRREL---SQTHITNQNLAGETFAFAAALDTNMPLRGTIMGGLEQLVNSAVTNFQTYS 537
           +C R+ L   S T + ++N + ET  ++A   ++     T  G      NS++ +FQ+  
Sbjct: 91  SCIRKTLLAPSSTRVPSKNSSYETLTYSAKDSSDDVFTETNSGFRSSNQNSSLKSFQSVP 150

Query: 538 TSNLN 552
            SN+N
Sbjct: 151 DSNVN 155


>SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1006

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
 Frame = +1

Query: 205 NIEMTDPEIRGGIDGFVLGS--AITSVLGTFSSLRLSQLLDM 324
           N+E+ + E R G   F+LGS  A  S  G +S +  S  L +
Sbjct: 59  NVELFNLEARSGASAFLLGSYTAAISSPGVYSMMTPSSCLSL 100


>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
           Msa1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 533

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -1

Query: 326 YMSNSCDSLKELKVPKTEVIALPRTKPSMPPLISG 222
           Y ++S  +  E   P   + +LP   PS+P L SG
Sbjct: 298 YFAHSLVNSTEFSTPNESLSSLPSILPSIPSLESG 332


>SPAC7D4.10 |vma13||V-type ATPase subunit H|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 450

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 16/45 (35%), Positives = 25/45 (55%)
 Frame = -1

Query: 641 YGHDESRTIYKFVFNL*SRLVAIEVTQLKSFKLLVEYVWKLVTAL 507
           Y  D+S+ ++  VF L S      V   K+F L +EY+ KL+ +L
Sbjct: 132 YLDDDSKLLFARVFALCSSSSPCSVA--KAFTLFLEYLGKLMQSL 174


>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1496

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +1

Query: 115 ERGSSSISIGTAGNWNSTQAPRHFMIHSRVNIE 213
           ER  +  +  +A +  S+ +PRHF  H+ VN++
Sbjct: 559 ERQFTGEAAVSANDVLSSSSPRHFSSHTPVNVD 591


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.130    0.372 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,538,810
Number of Sequences: 5004
Number of extensions: 46663
Number of successful extensions: 128
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)